| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2012 |
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| Symbol | |
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| ID | 6116275 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 2471726 |
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| End bp | 2473048 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641633515 |
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| Product | tryptophan synthase subunit beta |
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| Protein accession | YP_001760391 |
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| Protein GI | 170726365 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1350] Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) |
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| TIGRFAM ID | [TIGR01415] pyridoxal-phosphate dependent TrpB-like enzyme |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.909029 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCAAT TGAAGGATAA GCTCAGGTCA AATAATGTGA ATAAATTAGA TTACCAACTC
TCTTTAGAAG ATATGCCCAC TCAGTGGTTT AATTTCTTCC CCCACCTACC TAAACCATTA
CCTCCAGTAA GGGACAATGG GAAGCGTTCA ACTCTGGAGA TTAGCCAGTT AATTCGCCCT
AAAATATTAC TTGAGCAAAA CGCGCCAAAA GAGAATTGGA TAGATATTCC CGAAGAGGTG
ATAAATAAGT TGATCATGTG TGGTCGACCG ACACCATTGC GCAGAGCATT GAGTCTAGAG
AAACACCTTA AGACGCCTGC AAGAATCTAC TTTAAGCGGG AAGACACCAT GGCGACAGGG
AGTTTTAAAC TCTCCACTGC AGTTGCACAA GCATACTATG CGAAACAAGA AGGTAGAGAG
ATTCTTATAT CGGAAACCGG TGCAGGACAA TGGGGGATGA GTGTTGCTTT GGTGAGTCAG
ATGTTTGGCC TTGATGCTCG AATATTTATG GCTAGGTGTT CATTAGAGCA AAAACCGTAT
CGGCAACATT ATATGAAAAT GCTTGGATGT GAAGTATATC CTTCACCGTC AACTAAAACA
GAGTGTGGTA AAGAACTTCT ACTCCAAACT CCAGGTCACC CTGGAAGTAT TGGTAGCGCG
ATTAGTGAGG CTATTGAGAA TGCTTTAGAC ACGCCGGGAT CTGCTTATTT ATCTGGAAGC
AATGTAAATC ATGTGCACTT ACATCAAACC TTGCTTGGTT TAGAGGTTAA GCAGCAGCTA
TCGATGGCTG GTGAATCTAA TGTGGATCAT CTTGTAGCTT GTGTCAGTGG CGGGAGTAAT
TTATGCGGCT TTATGATGCC ATTTCTGCCT GAGAAGAACA GTGGAGCCAA AATTGATATG
TTGGGTGTGG AGTCAACTGC CTCCCCACGA TTAACCCAAG GAACCTATGA GTACTGTCGC
TCTGATGTTG CTGGTTATAC GCCAGAAGTG CTGAGTCACT CCATGGGAGA GAGTTACATA
CCTGCTCCAG TTCATGTGGG CGGTTTACGA AATCACAATA GCTCCCCCTT AGTCAGTCTA
CTCTGTCGAG AAGGTATTCT TCGCGCGGAG GCATTAGATG AATTTAATGC CTTTAAAGCG
GGCCAAATAA TGCTGAAAAC AGAGGGAATA TTAGTCGCGC CTGAGTCTTC CCATGCGGTT
GCTGCTGCCA TCGATCTTGC GGAAAAAGCA CGCATAGAAA ACAAAGAATC TGTGATTGTG
TTTTTAGCTA GCGGTAATGG TTTTTTGGAT CTGCAAGGTT ACAACGATGT ATTAAATAAT
TGA
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| Protein sequence | MDQLKDKLRS NNVNKLDYQL SLEDMPTQWF NFFPHLPKPL PPVRDNGKRS TLEISQLIRP
KILLEQNAPK ENWIDIPEEV INKLIMCGRP TPLRRALSLE KHLKTPARIY FKREDTMATG
SFKLSTAVAQ AYYAKQEGRE ILISETGAGQ WGMSVALVSQ MFGLDARIFM ARCSLEQKPY
RQHYMKMLGC EVYPSPSTKT ECGKELLLQT PGHPGSIGSA ISEAIENALD TPGSAYLSGS
NVNHVHLHQT LLGLEVKQQL SMAGESNVDH LVACVSGGSN LCGFMMPFLP EKNSGAKIDM
LGVESTASPR LTQGTYEYCR SDVAGYTPEV LSHSMGESYI PAPVHVGGLR NHNSSPLVSL
LCREGILRAE ALDEFNAFKA GQIMLKTEGI LVAPESSHAV AAAIDLAEKA RIENKESVIV
FLASGNGFLD LQGYNDVLNN
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