| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2007 |
|---|
| Symbol | |
|---|
| ID | 6116270 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 2465602 |
|---|
| End bp | 2466813 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 641633510 |
|---|
| Product | pyridoxal-dependent decarboxylase |
|---|
| Protein accession | YP_001760386 |
|---|
| Protein GI | 170726360 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAAAC ACGGCCTCTC TAAATCAGAA GTATATTCCA ATATACAGAA GCTACGTCAA
ACCGATGTAC CTTGGGATCG AGTACTGAAC TCTATCTGTA CTCAGCCTCA TGAGGTCGCA
GTTAAGGCAT TTACTGATGC AATAGATACC AACCTCGGTG ATGTTCGTAT TTTTCAGGGT
ACACATCAAA TTGAGCAACA GGTTATTCAG TCCATATCTA CCTTTTTACA TGCAAAAGAA
CCTGCAGGTA GCCTAGTTTC CGGAGGAACA GAAGCAAACC TATTAGCCCT ATACGTTGCC
AAAAAGCAGG CAAGAAGCAA GGCAAAGAAC AGACATGTCA GTGAAGTTAT TTGTGCTGAA
ACTGTGCATT ACTCTATGAA AAAGATCTTT GACTTGTTGG ATTTAACAGC GGTGATCTTA
CCTGTAGATG AAAAATTCCG TATGGATATT TCTCAAATCA ACAAACATAT TTCAGAAAAT
ACTGTAGCAA TAGTCGCAAC AGCGGGTAGC AGTGAATTCG GTTCAATCGA TCCAATTGAA
GAGTTAAGTG ATATTGCAGT GGCGCATCAA ATCTACCTAC ATGTCGATGC CGCAACAGGG
GGCTTTATCA TTCCATTTGC CAAAGCACTG GGATACCAAT TACCCAATTT CGACTTTAGT
TTACCAGGCG TATCCTCAAT AACGATGGAC CCTCATAAAT ATGGTTTAGC CAATATTCCT
GCGGGGGGCA TATTCTTTCG TGATCAGAGT TTAATTGAAC TGATATCTCT TGACTCATTT
TTTATTAACA CACCTAGCCA TAAGACATTT TTAGGCACAA GACCTGGCGG TGCTGCAGTT
GCAACCTTTG CGGTTTTAGA GCACTTAGGC TGGGATGGTT ATAAAGAGAT CACACGTAAG
AATTACGCCA CTATGGAGTA CTTGGTAGAG CAACTAAAGT GGCGAAACTA TCAACTCGCC
TCACCACCTG AGTTAAATAT TGTGATAGTT GACCTACCAA ATGCCGAAGA GGTCATGACA
TTACTGGAGG AGTGGGATTG GATAATTTCA GTATCAAAGC GATTCAGACA CTGTCTACGG
CTTGTCATTA CTGCCCATGT AAACATTGAG ATGATTGACA ACTTTCTAAC TGTGTTAGAT
GGGGCAGTAA ACTGCCTGAG CGATACAGCC TCCTTAGAAA ATACACAAGC AAGTCATGGG
GCTAAAGGAT GA
|
|---|
| Protein sequence | MRKHGLSKSE VYSNIQKLRQ TDVPWDRVLN SICTQPHEVA VKAFTDAIDT NLGDVRIFQG
THQIEQQVIQ SISTFLHAKE PAGSLVSGGT EANLLALYVA KKQARSKAKN RHVSEVICAE
TVHYSMKKIF DLLDLTAVIL PVDEKFRMDI SQINKHISEN TVAIVATAGS SEFGSIDPIE
ELSDIAVAHQ IYLHVDAATG GFIIPFAKAL GYQLPNFDFS LPGVSSITMD PHKYGLANIP
AGGIFFRDQS LIELISLDSF FINTPSHKTF LGTRPGGAAV ATFAVLEHLG WDGYKEITRK
NYATMEYLVE QLKWRNYQLA SPPELNIVIV DLPNAEEVMT LLEEWDWIIS VSKRFRHCLR
LVITAHVNIE MIDNFLTVLD GAVNCLSDTA SLENTQASHG AKG
|
|---|
| |