| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1990 |
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| Symbol | |
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| ID | 6116253 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 2447605 |
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| End bp | 2448471 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641633493 |
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| Product | DNA ligase |
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| Protein accession | YP_001760369 |
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| Protein GI | 170726343 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00542431 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAACCT TAAATAGAAA GTGGGGGGAG CTTGTCCTAT TTCTCCTCTT GTTCATGTCG
CTATCCTCTG TTGCGGGAGG GGAAGATGCA AAGTTGATTC AACTCGCAAC GGATGCAGAG
ATCGAGGGTG AAATAACACA GTACCTTATC AGTGAAAAAC TCGATGGTGT AAGAGGATTT
TGGGATGGGG AACAGCTTTA TACTCGCTCA GGACTTCGAA TTGTTACCCC TGCTTGGTTT
ACACATTCTT TCCCTACTTA CCCTCTAGAT GGTGAACTTT GGATGGGAAG AGGTACTTTT
GAGCAAGTTT CAGGCTTAGT GAGGCGTAAA ACGCCTTTAG AGAGTGAGTG GAAAAAAGTG
ACCTTTATGG TATTCGATTT TCCCGAGAGC AAACTCTCTT TTGGTCAACG TTATCAGTAT
TATGTGAAAG CCTTAGCTGA TATTTCACCC TACCTATCGG TAATAGAGCA AACTCAAGTA
CCGAATGTAG AACAACTTAA TGCCAAACTT GCCTTGGTTG TTAACGGAGG AGGAGAGGGG
TTAATGCTGC ATAAGCAGGA TGCTCTTTAT GTAGCAGGTC GAAATCGAGA CCTTATAAAG
CTTAAGCCAT TTTATGATGC GGAAGCGACC GTTATTGCTC ATCTTCCTGG GAAAGGTCAG
TTTAGTGGCT TACTTGGGGC ATTATTGGTT GAAACTCCAG AAGGTGTGCG CTTTAAAATA
GGCACCGGGT TTAGTTTGGA GGAGCGACGA CAACCGCCTA AGCTAGGGGA TATTATCACT
TATAAGTATT TAGGTTTTAC CCAGAAAGGG ACACCTAGGT TTGCCAGTTT TTTGCGGGTA
AGGGTTAATA GTAAAGTGAC ACAGTGA
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| Protein sequence | MKTLNRKWGE LVLFLLLFMS LSSVAGGEDA KLIQLATDAE IEGEITQYLI SEKLDGVRGF
WDGEQLYTRS GLRIVTPAWF THSFPTYPLD GELWMGRGTF EQVSGLVRRK TPLESEWKKV
TFMVFDFPES KLSFGQRYQY YVKALADISP YLSVIEQTQV PNVEQLNAKL ALVVNGGGEG
LMLHKQDALY VAGRNRDLIK LKPFYDAEAT VIAHLPGKGQ FSGLLGALLV ETPEGVRFKI
GTGFSLEERR QPPKLGDIIT YKYLGFTQKG TPRFASFLRV RVNSKVTQ
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