| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1986 |
|---|
| Symbol | yebU |
|---|
| ID | 6116249 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 2442928 |
|---|
| End bp | 2444364 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641633489 |
|---|
| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
|---|
| Protein accession | YP_001760365 |
|---|
| Protein GI | 170726339 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
|---|
| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0149307 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTCAAT TAAATCAAGA TTTTATCAAT AGCATCGCTA AAGATATGCC AGCTCATCTC
ACTATGGATG ATTTTATCAG CTACAGTAGT AAGCCCCTTC GGCCCTCTAT TCGTATTAAT
ACGTTAAAGA TCTCATCAGA CGAGTTTGTC ACACTGATGG CAGCTAAAGG TTGGACTCTC
GATCCGATCC CTTGGTGCAG TGATGGTTTT TGGGTGGCGT TAGATAATGA GATACAGCTT
GGCAATACCA TAGAACATAT TCAGGGACTT TTTTACATTC AAGAAGCCAG CTCCATGCTG
CCCCCTACTG CACTGTTTGA CGGTTTGGAT AACTCATCTG AATACACCAT TCTTGACATG
GCCTCAGCAC CAGGTTCGAA AACCACTCAG ATGGCCAGCT TAATGGATAA CAAGGGTCTG
TTAGTTGCCA ACGAATACTC CTCTAGCCGG GTCAAAGTAC TTCACGCCAA TGTACAACGC
ATGGGCGTCT ACAACACAGC CTTAACTCAT TTCGATGCTC GCGTATTTGG TGAATATCTT
TATCATCAGT TTGATGCCAT CTTACTCGAC GCCCCATGTA GCGGAGAGGG AACGATACGA
AAAGATCCGT TAGCACTGCG CAACTGGAGT CTAGAAGAAA ATGCCTCGAT TATTGAAACA
CAAAAGGCGC TAATTGAATC AGCATTTCTC GCCCTTAAAA CTGGCGGAAG CTTAGTCTAT
TCAACCTGTG CCCTTAGCCG GAGTGAGAAC CAAGAGGTCT GTGAACACTT AATGTCTTGT
TTTCCTCAGG CTGTCGAGTT TCAGTCATTG AGCGAGCTAT TTCCCGATGC AGACAAGTCT
TGTACTTCAG AGGGATTCCT GCACGTTTGG CCACAAATAT ACGATAGTGA AGGTTTCTTC
ATCGCTAAGG TCCGTAAAGT AGCCGATGTC GAGCGTCAGA AGCCTCTGCC AAAAGCACAG
AGAAACTTCC CATTTACAGC TGCCAATAAC AAAACAAAAG ATGAGCTTAG CCACTATTTT
AAGCACACTT TTGGCATCAG CTTACCTAAA GATGGCTTAA TCATGGAGCG GGATCTTGAA
TACTGGTTAT TCCCAGCAAA AATGGCCGAT TTTATCGGAA AAATGCGCTT TCAGCGTATT
GGGCTTAAGT TAGCTGACGG GCTGAAAAAA GGGTTTAAGG TTCGTCATGA AGCAATTATG
GCACTATCGG ATAAACACAA CGCCATTGAA CTCAATGAAT CACAAGCAAT AGAGTATTTG
ATGGGACGGG ATATTCCGTT GCAAGATGGC GGAAAACCTC AAGGAGAGGT GATTTTAACC
TATCATCATT GTGCACTTGG CGTAGCAAAG CACCTAGGGA AACGACTTAA AAACAACTTA
CCTAGAGAAC TAGTACGGGA CAAAGTGATC AGTGCTAAAG CAAAAACCGA GCTTTGA
|
|---|
| Protein sequence | MVQLNQDFIN SIAKDMPAHL TMDDFISYSS KPLRPSIRIN TLKISSDEFV TLMAAKGWTL
DPIPWCSDGF WVALDNEIQL GNTIEHIQGL FYIQEASSML PPTALFDGLD NSSEYTILDM
ASAPGSKTTQ MASLMDNKGL LVANEYSSSR VKVLHANVQR MGVYNTALTH FDARVFGEYL
YHQFDAILLD APCSGEGTIR KDPLALRNWS LEENASIIET QKALIESAFL ALKTGGSLVY
STCALSRSEN QEVCEHLMSC FPQAVEFQSL SELFPDADKS CTSEGFLHVW PQIYDSEGFF
IAKVRKVADV ERQKPLPKAQ RNFPFTAANN KTKDELSHYF KHTFGISLPK DGLIMERDLE
YWLFPAKMAD FIGKMRFQRI GLKLADGLKK GFKVRHEAIM ALSDKHNAIE LNESQAIEYL
MGRDIPLQDG GKPQGEVILT YHHCALGVAK HLGKRLKNNL PRELVRDKVI SAKAKTEL
|
|---|
| |