Gene Swoo_1982 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1982 
Symboltmk 
ID6116245 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand+ 
Start bp2439980 
End bp2440612 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content48% 
IMG OID641633485 
Productthymidylate kinase 
Protein accessionYP_001760361 
Protein GI170726335 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0125] Thymidylate kinase 
TIGRFAM ID[TIGR00041] thymidylate kinase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.102848 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones7 
Fosmid unclonability p-value0.00478134 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAGTAAGC AATTGAACAG CAAATTTATT GTCATTGAGG GCTTAGAGGG CGCGGGTAAG 
TCCAGTGCTA TCTCATTGGT TCGTGATTTT ATCGAAAAGC ACACAGGTGC AGTGCCTGTC 
TGTACCCGTG AGCCAGGCGG AACACCGCTG GCTGAGCGTA TTCGCGATCT GGTGAAAATT 
GCCGATGAGA CAGATCCCTT ATGTGATGAA GCAGAGTGCC TGTTATTTTA TGCCGCTAGG 
GCCCAGTTGG TTGCCAATGT GATTAAGCCT GCCCTTAGGC GCGGTGAGTG GGTGTTAGGC 
GACAGGCATA ATTTGTCCTC TTTGGCCTAT CAAGGGGGAG GTAGGGGCCT GAGCACTTTA 
GTTGAGTCTG TGAGTCGTGC GACGTTAGGT GATTTTAAAC CTGATCTGAC CATCTACCTT 
GATATTGAGC CTAAACTGGG TCTGACTCGT GCGGCTAACC GTGGAGAGCT CGATAGAATT 
GAAGTTGAAG AGATAGCCTT TTTTGAGCGT GCGAGACACA CTTTTCTCTC CTACGCTCAG 
CAAGATGACT CAATTCAAGT GATTGATGCT GGTCAAACCA TGGCTGAAGT TCATAAAGAT 
ATTGTGGCCT TGTTACAGGC GCAGGATTGG TAA
 
Protein sequence
MSKQLNSKFI VIEGLEGAGK SSAISLVRDF IEKHTGAVPV CTREPGGTPL AERIRDLVKI 
ADETDPLCDE AECLLFYAAR AQLVANVIKP ALRRGEWVLG DRHNLSSLAY QGGGRGLSTL 
VESVSRATLG DFKPDLTIYL DIEPKLGLTR AANRGELDRI EVEEIAFFER ARHTFLSYAQ 
QDDSIQVIDA GQTMAEVHKD IVALLQAQDW