| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1960 |
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| Symbol | |
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| ID | 6116223 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 2410403 |
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| End bp | 2415445 |
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| Gene Length | 5043 bp |
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| Protein Length | 1680 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641633463 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_001760339 |
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| Protein GI | 170726313 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.529564 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0344276 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGAAT TGCAATCTCA AGCACTGATT AAGTTCACCA TAGCGAGAAA ACTTCTGTTA
GTTATCATAT CTAACTTACT GATGATGAGT TTAGTTGGTG CTTATGCAGT GAGCTTGATG
CTGTCAACTG GTGAGGAGAT CGAAGAGGCG GTATTCATTG AAATGCCGAG GATGAGCCAT
TTAACACTGA CTGAGTCGCA TCTTTTGGAG CAGCAAACTT ATTTCGAAAA AGTATTACGC
TTAGCCGAGG AGATACAGCT TGATTTAAGC TCTGGCGATG AAAAAAGCCT GATTATCGTG
ACCAGAGAGT TTAATCGAAA CAACCTACTT TTTAGAGAGT TGTCAGCAAG AATCACAGAT
GAGCTTGATA AAAGCATCAT TGAAATACAA GGGGTTATCA ACACTCAAAG TATACAGATT
GAAGATGATA GTCATCAGCT ACTGCTCAAG GGGGTTAAGG AGGTGAAGCG TTTACATCTC
CAACATGAAT CTAAAACCTT TGATATTTTT AACTCTGTAG AGTCTGGTGA ATGGGATCAC
TCCACCAACC TCATGATGAT TAAAGAGCTT GAAACAGAAG GCAGGGAGGT AGAACAAAGA
CTTGCCACTT TACGAGATAT GGTCGAGGAG CAGATCCAAA AACACCTGCT AACGACTAAA
CAAAATGGTA CTCAAGGGAT TAAAGCGGTT GTTGTTTTTG TTCTGATTGC ACTGCTAATA
AGCTTAGCTA TCTCACTGTT TACAGCTCGA CTTATTATTA AACCCATCAG TGATATCAAA
CGGGTGACAG ATGCATTAAT AAAAGGAGAT TTGACTCGCA ACATCTCTTG GAAAAGTAGT
GATGAAGTGG GGGCTCTTTC TGTGTCGATT AATGAAGTCA TTAGAACAAT GAAAGAGGTT
GCAGAGCAAG CTAATGCTCT TGCCTGTGGT GATTTTTCTA AAGATATTTT GGTTAAAGGG
GAAAATGATC AATTGATCAT GGCCTTGATC CAGATGAAAA AACAGATAAA GGAGAGAAAT
ACCTCATTGT CTCGTTCGTT AAGCCTCAAC AAAGGGATTG TGAGTACTGC TGTCGATGGC
ATTATCTCGA TTAAAGATGA TGGCACCATT CTCTCTGTTA ACTTAGCAAC AGAGAGAATG
TTTAAATATT TAGCTGAAGA TCTCATTGGT AAGAATATTA AAGTGTTGAT GCCTGAGCCC
TATCACTCAG AGCATGATAA CTATCTGAGT AAGTATAAAA ATACAGGGAT TAAAAGTGTG
ATAGGTAAAG GGAGAGAGGT ACAAGCCATG CGCAGTGATG GCAGTACCTT TCCCATATTT
CTCTCTGTTG GAGAGGTACA ACAAGGCGAT GAGACACTGT ATACCGGTTT TATTCGAGAT
ATCAGTCAGC AAAAACAGTA TGAACAAGAG ATGCTTAAGA GTGAAGCCTT AAACCGAGGC
ATGGTTGATA CTTGTTTAGA TGCCATTCTC TCTATTTCCG CTAAGGGTGT GATCATTGCC
TGTAATCGCG CTGCAGAGTC TCTATTTCAA TACTCTCGAG ATGATTTGCT CGGTAAGAAA
ATAAACCTCT TGATGCCGAG CCCTTTTACT GAAGAGCACG ATACTTACCT TAGTAATTAC
CTAAACACAG GGACCAAAAA GGTGATTGGT CAGGGACGTG AGGTTATAGG TTTAAAAAGA
GATGGCTCCA CTTTTCCAAT GTACCTGACC GTAGGTGAAG TTATACAAGA GGGGGAGAGT
ATTTTTACCG GGTTTGTTAG AGATATCACA GTAGAGAAAA AGTTTGAACA GGAGATGATG
AAAAGTGAAG CGCTTAATCG TGGCATGGTC GATACCTGTT TGGACGCCAT TCTCTCTATC
TCAGTTAAGG GCGTGATTGT CTCTTGTAAT CATGCTGCAC AGTCTCTGTT TCAATATCGA
AGTGACGAGC TAATAGGCCA AAAGATAAAC CGTTTAATGC CAAGTCCCTT TACAGAGGAG
CATGATGGCT ATCTTGAAAA GTATTTTGCT ACTGGTATTA AAAAAGTCAT AGGGCAAGGG
CGAGAGGTGG TCGGCTTAAA AAGAGATGGC TCGACCTTCC CAATGTATTT GACCGTTGGT
GAGGTCGAGC AAGATGGAGA GACTATTTTT ACTGGCTTTG TGCGTGATAT TAGCAAAGAG
AAACAGTATG AATTAGAGCT TAAGAAAACC AATGAAGATC TTCTGAAGCA AAATGAGTTG
AAGAGTCAGG TCTCTAGAAT TAACGACTTG ACCCAAGGTG CCACGGATAT GATGGCGATG
TCCGATGAGA TTATTTCAGC ATTGGCCGAA ATGATGAAAG CAGGAAATGG CGTGTTGTAC
ACCTATGATC GCGACGATGC CAGACTGACC TTGTCAGGAA GTTATGCTTT CAAAAAAAGA
AAGGCAATAC TCCCCTCTAT CGCTATGGGA GAGGGCTTGG CAGGTCAATG TGCGAAAGAG
CAAAAAACCA TACTTCTAAC TCATGTTCCC ATCGATTATA TTCAAATAAA TTCCGCTTTG
GGCCAGAGTA CTCCTCTCAA CGTGTTAGTG GTACCAGTAT TATTTGAAGA TGAGTTGGTT
GGTGTTATTG AGCTTGCTTC ATTTAGAGAG TTCAGTGATG AGCAAGTCGA AGTGATAGAG
CTCATCTCCT GTAATTTAGG CATTGTGGTA AATAATCTAC GAAATCAACA AGTCACTCAG
GAACTTTTAG TTGAGACTCA GAGGCAGTCA GAGGAGTTAC AGGCGCAGCA GGAGGAGCTT
AAGAGCTCAA ATGATAGTTT AGTCGAGCAA ACTCAACGCC TTAAAGCTTC AGAGGAGGAG
TTGAAGGATC AGAGTGAAGC GTTAAAAGTA TCCAATAAGG AGCTGGAGGA GAAACAGACC
TTCCTTAAGC GCCAAAGAGA TGAGATTGAA AGCGCCAGAG CTGATCTTAC AGTGAAAGCG
GATGAACTGG CCTTAGCCAG TAAATATAAG TCCGAGTTCT TGGCCAATAT GAGTCATGAG
TTAAGAACCC CCCTCAATAG CCTTCTTCTA CTCGCTAAAG GCTTGGCTGA TAATAAGAGT
AAAAATTTAA ATGAGACTGA AGTTGAAGAT GCTCAAGTTA TCTTTGATGG TGGTAATAAC
CTTCTGTGTT TAATCAATGA CATTATGGAT CTCTCCAAAG TCGAAGCGGG TAAGCTCTCT
ATCCATATTG AAGAGGTTAA TATAAGTACG CTATGTCGAA ATTTACGGCA GGTCTTTAAC
CCTATTGCTA AGAACCGTGA ACTGGAATTT GATATTAAGG TCGATGAAAA ACTGCCTGCT
ACGGTGAGTA GCGATGGACA TCGGATTGAG CAGATACTGA GAAACCTACT TTCTAATGCA
TTAAAATTTA CCGAAGCTGG CAGTGTTACG CTATTTATCG GTTACTCCGC AGCTGACACT
GTTTTCTCCC ATAGTTGTTT AGACCCTAAT ACTGCCTTGT CGTTTGCTGT TGTCGATACA
GGTATCGGTA TCCCGCAAAA TAAGATCCAG GCAATCTTTG AAGCATTTCA ACAGCAAGAT
GGCTCAACCA GTAGAAAGTA TGGTGGCACT GGGCTAGGTT TAACCATAGC TAGAGAGTTG
ACTCGTTTGT TAGGTGGGGA GATACAGCTA GAAAGTGAGC CGAATCAAGG CAGCACTTTT
ACGCTCTTTT TACCGAATGC CTTCGATGTG AATGGGGTGG AGGCTAAATC TGATGGCGGA
TCAATTGTCT CTGATATTAA GTTTTCAGCC GAAGACCAAG ACCCATCTCC CGCTGAGCCT
ATAGAACAAG CCATCCCAGC AATGCCTCCC AGAGAACCTT ATCTTGAGTT TATCCCCGAT
GATAGAAATA ACCTACACGA AGGGGAGTTG AGCTTACTCA TTATCGATGA TGATCCGACT
TTCGCGAAAA TATTAAGGGA TCATGCTAGA GAAGCGGGTT ATCAATGTCT GGTGGCGGGC
GATGGACGTA TGGGGATCTA TCTAGCACAA GAGTATCAGC CCAGTGGGAT TATTCTCGAC
ATTATGCTGC CAGATATCGA CGGTCATAAG GTGCTCGAAC AATTAAAGTT CAGCCTTAAG
ACTCGTCATA TTCCAGTGGA GATCATCTCA GCTCACAGTG AAGATAAGAA CACTGCATTA
GTCAAAGGTG CAGTTGGGTT ACACACTAAA CCTGTTAGCC AAGAAGCCTT GTTAACAGTA
CTTGATGAGA TAAAAGCCTT TTCTAGTAAT GAGTTACGCA GGCTACTGGT CATTGAAGAT
GATACAGGTA ACCAGACCTC TATTATCAGG CTATTAGATG GCAGTGATAT CGATATTAAG
TGTGTCGGCA AAGGGAGTGA TGGCGTCGAT GAGATCCTGT CGGGACAATA TGACTGCATT
ATCTTAGATC TAGGTTTACC CGACATCACA GGTTTTGAGG TACTTAGCCG AGTGGAAGCC
AGTGAGTTAG AGCGAGTGCC ACCTGTGATT ATTTATACGG GTAAGGAGAT AACGGATGAG
GAGCAAAATG AGCTTAACAA GTTCTCATCG ACAATTGTGA TAAAGGGCGT GGGCTCAGGT
GAGCGCTTAT TGGATGATAT CTCTTTGTTT CTGCATGACA TCGAAAAGCG CTTTGGTAGC
GAAGAGCGCA ATACAATTCA GATGCTGCAT GATGAAGATG CCATGTTTTT AGGTCGTAAG
GTGTTAATTG TTGACGATGA TATGAGAAAC ACCTATGCCC TGTCTAAAAA ATTAATCGAA
GTAGGGTTTG AGGTAGATAT GGCCCATGAC GGCAAGGAAG CGGTGGATCT CCTATTAGTT
GAGAAGAGCT TTGAATTGGT GCTAATGGAT ACCATGATGT CAGAGATGGA CGGTTATGAG
GCGATAAAGC AGATTAGGGA GATGGAGCAT TATAAGCTGG TTCCCATTAT CTCTTTAACG
GCGAAAACGA TGCCGGAAGA TAGAGCCAAG TCCCTGCAAG CAGGGGCTTC AGAATATCTA
ACCAAACCCA TCGATTTTGA AAAGTTACTG TCTATTTTGC GTATTTGGCT GTTTAAGCAC
TAG
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| Protein sequence | MDELQSQALI KFTIARKLLL VIISNLLMMS LVGAYAVSLM LSTGEEIEEA VFIEMPRMSH
LTLTESHLLE QQTYFEKVLR LAEEIQLDLS SGDEKSLIIV TREFNRNNLL FRELSARITD
ELDKSIIEIQ GVINTQSIQI EDDSHQLLLK GVKEVKRLHL QHESKTFDIF NSVESGEWDH
STNLMMIKEL ETEGREVEQR LATLRDMVEE QIQKHLLTTK QNGTQGIKAV VVFVLIALLI
SLAISLFTAR LIIKPISDIK RVTDALIKGD LTRNISWKSS DEVGALSVSI NEVIRTMKEV
AEQANALACG DFSKDILVKG ENDQLIMALI QMKKQIKERN TSLSRSLSLN KGIVSTAVDG
IISIKDDGTI LSVNLATERM FKYLAEDLIG KNIKVLMPEP YHSEHDNYLS KYKNTGIKSV
IGKGREVQAM RSDGSTFPIF LSVGEVQQGD ETLYTGFIRD ISQQKQYEQE MLKSEALNRG
MVDTCLDAIL SISAKGVIIA CNRAAESLFQ YSRDDLLGKK INLLMPSPFT EEHDTYLSNY
LNTGTKKVIG QGREVIGLKR DGSTFPMYLT VGEVIQEGES IFTGFVRDIT VEKKFEQEMM
KSEALNRGMV DTCLDAILSI SVKGVIVSCN HAAQSLFQYR SDELIGQKIN RLMPSPFTEE
HDGYLEKYFA TGIKKVIGQG REVVGLKRDG STFPMYLTVG EVEQDGETIF TGFVRDISKE
KQYELELKKT NEDLLKQNEL KSQVSRINDL TQGATDMMAM SDEIISALAE MMKAGNGVLY
TYDRDDARLT LSGSYAFKKR KAILPSIAMG EGLAGQCAKE QKTILLTHVP IDYIQINSAL
GQSTPLNVLV VPVLFEDELV GVIELASFRE FSDEQVEVIE LISCNLGIVV NNLRNQQVTQ
ELLVETQRQS EELQAQQEEL KSSNDSLVEQ TQRLKASEEE LKDQSEALKV SNKELEEKQT
FLKRQRDEIE SARADLTVKA DELALASKYK SEFLANMSHE LRTPLNSLLL LAKGLADNKS
KNLNETEVED AQVIFDGGNN LLCLINDIMD LSKVEAGKLS IHIEEVNIST LCRNLRQVFN
PIAKNRELEF DIKVDEKLPA TVSSDGHRIE QILRNLLSNA LKFTEAGSVT LFIGYSAADT
VFSHSCLDPN TALSFAVVDT GIGIPQNKIQ AIFEAFQQQD GSTSRKYGGT GLGLTIAREL
TRLLGGEIQL ESEPNQGSTF TLFLPNAFDV NGVEAKSDGG SIVSDIKFSA EDQDPSPAEP
IEQAIPAMPP REPYLEFIPD DRNNLHEGEL SLLIIDDDPT FAKILRDHAR EAGYQCLVAG
DGRMGIYLAQ EYQPSGIILD IMLPDIDGHK VLEQLKFSLK TRHIPVEIIS AHSEDKNTAL
VKGAVGLHTK PVSQEALLTV LDEIKAFSSN ELRRLLVIED DTGNQTSIIR LLDGSDIDIK
CVGKGSDGVD EILSGQYDCI ILDLGLPDIT GFEVLSRVEA SELERVPPVI IYTGKEITDE
EQNELNKFSS TIVIKGVGSG ERLLDDISLF LHDIEKRFGS EERNTIQMLH DEDAMFLGRK
VLIVDDDMRN TYALSKKLIE VGFEVDMAHD GKEAVDLLLV EKSFELVLMD TMMSEMDGYE
AIKQIREMEH YKLVPIISLT AKTMPEDRAK SLQAGASEYL TKPIDFEKLL SILRIWLFKH
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