| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1956 |
|---|
| Symbol | |
|---|
| ID | 6116219 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 2404949 |
|---|
| End bp | 2406175 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641633459 |
|---|
| Product | Bcr/CflA subfamily drug resistance transporter |
|---|
| Protein accession | YP_001760335 |
|---|
| Protein GI | 170726309 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.587196 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0575166 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAAACAG ATCCACAGCA ATCGCCAGCC ACAGTTACAC CCGTCGCTAT CGTTAACCTT
GCCATATTAA TCCCCATGCT AGCTGCCATC GTAGCTATCA CGCCTTTGGC TATCGATATG
TATTTGCCTG CAATGGCAAC CTTAGCCAGT AGTTTCCATT CCGATATCAC TACAGTGCAG
CAATCTTTGA GTATCTATCT GGCAGGTTAT GCCGTAGGGA TGCTCTGTTT TGGCCCCTTA
GCAGATAGGA TCGGTAGACG ACCTCTTGTA CTAATGGGTT TAACAGGTTT TATGTTAGTG
AGTCTCTGCT TGGCCTTCGT CAACAATGTT GAACTATTTT TAGCATTAAG ATTTGCACAA
GCTTTTATTG GTGCTGCCGC TACGGTTGTT GTGCCTGGTT ATATCAAAGA GGTCTATGGA
GAAAACACAG CTAAGGGAAT GTCATATGTA AGCTTAATAA TGATGTTAGC GCCTCTGATA
GCCCCTAGCA TAGGCAGTCT TATCCTAGAG CTTGGAGAGT GGCATCTCAT CTTCTTCATT
CTTGCAGCTT ACGCGTTCAT CTTGCTAGCA CTAGTGCTGT GGAAGTTGAA GATGCCCAGC
GACAGTGATG CAAACAGCCG TAGCCAAAAA TCTTTCTTTG GAGCCTATGC CGTGGTCTTC
ACCAAGCCTG GGACAAAACT GCATATCGCC AGTGGCGTAC TGACCTCATT TGCTTTTTTC
TGCTACCTGA CCGCCTCCCC CTTTGTTTAC ATGGAGGTTT TTGGCTTAGA CAAGTCACTT
TTTGCCATAC TCTTTAGCAC CAATGTTGGC GCACTCATGT TAGCCAATGT TATAAACAGC
CGAATTGTTG TGCGTTACGG TTCAAGACTG ATGCTAAAAG TTTCAACCTT ACTGGCGATG
CTTGCAGGCT CAGCGCTGTT ACTCGTTAAT CTTTTTGGGC TTAGTTATCA CTTTACTGTG
GCTATGTTGA TCCCCTTTAT GGGGTTCTTA GGGATCATGT CCGTCAACGC TGATGCTATT
GTGCTGATGA AATTTAAAAA AGAGACAGGT ACTGCAACCG CAGTGATTGG CACCTTGCGC
TTTGGCTGTG GTGCCATGGC AGGCCCGCTG CTTGCCCTAT TTTATACAGG TACAGCAGTG
CCGTTTTCAG CACTTATGCT AAGTGCCGTC ATCTTAGTTG GACTGTGTCA GTTTTTTGCA
GCTCACGGCG TTCAGTGTGA AGAGTGA
|
|---|
| Protein sequence | MQTDPQQSPA TVTPVAIVNL AILIPMLAAI VAITPLAIDM YLPAMATLAS SFHSDITTVQ
QSLSIYLAGY AVGMLCFGPL ADRIGRRPLV LMGLTGFMLV SLCLAFVNNV ELFLALRFAQ
AFIGAAATVV VPGYIKEVYG ENTAKGMSYV SLIMMLAPLI APSIGSLILE LGEWHLIFFI
LAAYAFILLA LVLWKLKMPS DSDANSRSQK SFFGAYAVVF TKPGTKLHIA SGVLTSFAFF
CYLTASPFVY MEVFGLDKSL FAILFSTNVG ALMLANVINS RIVVRYGSRL MLKVSTLLAM
LAGSALLLVN LFGLSYHFTV AMLIPFMGFL GIMSVNADAI VLMKFKKETG TATAVIGTLR
FGCGAMAGPL LALFYTGTAV PFSALMLSAV ILVGLCQFFA AHGVQCEE
|
|---|
| |