Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1952 |
Symbol | ushA |
ID | 6116215 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 2399450 |
End bp | 2401159 |
Gene Length | 1710 bp |
Protein Length | 569 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641633455 |
Product | bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor |
Protein accession | YP_001760331 |
Protein GI | 170726305 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.643025 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0714944 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAATT TGTTAATTAA AGGACTTGTT GCATCTGCTG TACTGGCAGC ATTAACGGGC TGTGGTAGCG ATAATGATGA TGCACCCGTT TTACCGACTA CCTGTGCCGA AGCTGGTGAG GCATGTACCA CTTTCACTGT ACTGCATACG AATGATAACC ATGGCCGTTT TTGGGAAAAC AGGCATGGCG AATATGGCAT GGCGGCACGT AAGACTCTGA TCGATCAGAT CCGTGCAGAG GTCGAGTCCA ATGGCAGTGA AACAATTCTG CTCTCAGGCG GTGATATCAA TACAGGTGTA CCTGAGTCAG ATCTGCAAGA TGCACGTCCT GATTTTGTTG GTATGAACCT GATTGGTTAC GATGCTATGG CTGTTGGTAA CCACGAATTT GATAACCCGT TAGCAACTGT TGAGATGCAG CGTGAGTTGG CAAACTTCCC AATGCTGGCT GCTAATATCT ATGATAAAGC TTCTGGTAAG CGTTATTTTG ATGCTTATAA GGTCTTTGAT GTAAATGGCC TGCGTATTGC GGTTGTAGGA TTGACGACTG AAGACACTAA GAAAATTGGT AACCCTGAAT TTATCAGTGG TCTTGAATTT ACCGACCCTG CGACAGAGAT CCAGAAAGTC ATTAAAGATA TTAAAGATGC CGATGAAGCG GATCTTATCT TTGCTACAAC CCATATGGGA CACTACGCTG ACGCACAAAA TGGCAGTAAT GCACCGGGTG ATGTCGCCAT GGCTCGTGCA GTAACAGCTG GCGATCTGCA TGCGATTATT GGTGGTCACT CTCAGAACCC TGTCTGTATG GAGCCTGGTA CTAACGATTA CGCAGACTTT ACGCCTGGTG GCGATTGTAC GCCTGATAAG CAAAATGGCA CCTATATCAT GCAAGCCCAT GAGTGGGGTA AGTATGTTGG ACAAGCTGAT TTCGAATACT TCAACGATGA GCTACACCTT GCAAGCTACA AGCTGATCCC GGTTAACTTG AAGAAGAAAA ATGATGCGGG AGAGCGTGTG TTGATTGGTG AAGAGATCAC ACCAGATGGC ACTGTATTAG AGATCCTGAA GCAGTATCAA GAGAAAGGTC AAGACCAGCT AAACGAAGTG ATTGCGACAA CGGCAGAGAA GCTTGAAGGT GAGCGTGCAG TTGTGCGTTT TATGCAGACT AACTTAGGTC ACTTAATCTC AACTGCGCAC ACCTCAAAAG TAAATGCTGA TGTTGGTGTG ATGAACTCAG GTGGCGTACG CGCATCTATT GAGCCTGGTG AGATCACTTA TAAGGATGTA TTAACTGTGC AGCCATTTGG TAACTCTATC ACTAAGAGTA CAGTAACAGG CGCTGAGTTA ACTGAATACT TAGGCGCTGT TGCATCTCTA CAGATTGACT CAGGTGCCTA TGCTCAACTG ACTGGCGTAA AAATGACCGT TGATTGTGTT GCTAAAACTG TCGATATCAG CGATGTCAAT GGCAAAGGCT ATGATGCCGC TGCAACTTAT ACATTTACCG TTCCTAGCTT TAACGCTGCT GGTGGTGACG GTTATCCTGT ATTGACCCCT GTGATGACAG GTTTTGTTGA TGCAGCCGTT ATGTATGACT TCTTAAAAGA AAAGGGCTCT ATTGCTGCAG GTGAATTTGC ACCGACTGGT GATGTTGTTT ATGAGAACTC TATGAGCACT GATGGTTGTC AGGTACTAAG CACTCAATAA
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Protein sequence | MKNLLIKGLV ASAVLAALTG CGSDNDDAPV LPTTCAEAGE ACTTFTVLHT NDNHGRFWEN RHGEYGMAAR KTLIDQIRAE VESNGSETIL LSGGDINTGV PESDLQDARP DFVGMNLIGY DAMAVGNHEF DNPLATVEMQ RELANFPMLA ANIYDKASGK RYFDAYKVFD VNGLRIAVVG LTTEDTKKIG NPEFISGLEF TDPATEIQKV IKDIKDADEA DLIFATTHMG HYADAQNGSN APGDVAMARA VTAGDLHAII GGHSQNPVCM EPGTNDYADF TPGGDCTPDK QNGTYIMQAH EWGKYVGQAD FEYFNDELHL ASYKLIPVNL KKKNDAGERV LIGEEITPDG TVLEILKQYQ EKGQDQLNEV IATTAEKLEG ERAVVRFMQT NLGHLISTAH TSKVNADVGV MNSGGVRASI EPGEITYKDV LTVQPFGNSI TKSTVTGAEL TEYLGAVASL QIDSGAYAQL TGVKMTVDCV AKTVDISDVN GKGYDAAATY TFTVPSFNAA GGDGYPVLTP VMTGFVDAAV MYDFLKEKGS IAAGEFAPTG DVVYENSMST DGCQVLSTQ
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