Gene Swoo_1952 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1952 
SymbolushA 
ID6116215 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp2399450 
End bp2401159 
Gene Length1710 bp 
Protein Length569 aa 
Translation table11 
GC content45% 
IMG OID641633455 
Productbifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor 
Protein accessionYP_001760331 
Protein GI170726305 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.643025 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0714944 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAATT TGTTAATTAA AGGACTTGTT GCATCTGCTG TACTGGCAGC ATTAACGGGC 
TGTGGTAGCG ATAATGATGA TGCACCCGTT TTACCGACTA CCTGTGCCGA AGCTGGTGAG
GCATGTACCA CTTTCACTGT ACTGCATACG AATGATAACC ATGGCCGTTT TTGGGAAAAC
AGGCATGGCG AATATGGCAT GGCGGCACGT AAGACTCTGA TCGATCAGAT CCGTGCAGAG
GTCGAGTCCA ATGGCAGTGA AACAATTCTG CTCTCAGGCG GTGATATCAA TACAGGTGTA
CCTGAGTCAG ATCTGCAAGA TGCACGTCCT GATTTTGTTG GTATGAACCT GATTGGTTAC
GATGCTATGG CTGTTGGTAA CCACGAATTT GATAACCCGT TAGCAACTGT TGAGATGCAG
CGTGAGTTGG CAAACTTCCC AATGCTGGCT GCTAATATCT ATGATAAAGC TTCTGGTAAG
CGTTATTTTG ATGCTTATAA GGTCTTTGAT GTAAATGGCC TGCGTATTGC GGTTGTAGGA
TTGACGACTG AAGACACTAA GAAAATTGGT AACCCTGAAT TTATCAGTGG TCTTGAATTT
ACCGACCCTG CGACAGAGAT CCAGAAAGTC ATTAAAGATA TTAAAGATGC CGATGAAGCG
GATCTTATCT TTGCTACAAC CCATATGGGA CACTACGCTG ACGCACAAAA TGGCAGTAAT
GCACCGGGTG ATGTCGCCAT GGCTCGTGCA GTAACAGCTG GCGATCTGCA TGCGATTATT
GGTGGTCACT CTCAGAACCC TGTCTGTATG GAGCCTGGTA CTAACGATTA CGCAGACTTT
ACGCCTGGTG GCGATTGTAC GCCTGATAAG CAAAATGGCA CCTATATCAT GCAAGCCCAT
GAGTGGGGTA AGTATGTTGG ACAAGCTGAT TTCGAATACT TCAACGATGA GCTACACCTT
GCAAGCTACA AGCTGATCCC GGTTAACTTG AAGAAGAAAA ATGATGCGGG AGAGCGTGTG
TTGATTGGTG AAGAGATCAC ACCAGATGGC ACTGTATTAG AGATCCTGAA GCAGTATCAA
GAGAAAGGTC AAGACCAGCT AAACGAAGTG ATTGCGACAA CGGCAGAGAA GCTTGAAGGT
GAGCGTGCAG TTGTGCGTTT TATGCAGACT AACTTAGGTC ACTTAATCTC AACTGCGCAC
ACCTCAAAAG TAAATGCTGA TGTTGGTGTG ATGAACTCAG GTGGCGTACG CGCATCTATT
GAGCCTGGTG AGATCACTTA TAAGGATGTA TTAACTGTGC AGCCATTTGG TAACTCTATC
ACTAAGAGTA CAGTAACAGG CGCTGAGTTA ACTGAATACT TAGGCGCTGT TGCATCTCTA
CAGATTGACT CAGGTGCCTA TGCTCAACTG ACTGGCGTAA AAATGACCGT TGATTGTGTT
GCTAAAACTG TCGATATCAG CGATGTCAAT GGCAAAGGCT ATGATGCCGC TGCAACTTAT
ACATTTACCG TTCCTAGCTT TAACGCTGCT GGTGGTGACG GTTATCCTGT ATTGACCCCT
GTGATGACAG GTTTTGTTGA TGCAGCCGTT ATGTATGACT TCTTAAAAGA AAAGGGCTCT
ATTGCTGCAG GTGAATTTGC ACCGACTGGT GATGTTGTTT ATGAGAACTC TATGAGCACT
GATGGTTGTC AGGTACTAAG CACTCAATAA
 
Protein sequence
MKNLLIKGLV ASAVLAALTG CGSDNDDAPV LPTTCAEAGE ACTTFTVLHT NDNHGRFWEN 
RHGEYGMAAR KTLIDQIRAE VESNGSETIL LSGGDINTGV PESDLQDARP DFVGMNLIGY
DAMAVGNHEF DNPLATVEMQ RELANFPMLA ANIYDKASGK RYFDAYKVFD VNGLRIAVVG
LTTEDTKKIG NPEFISGLEF TDPATEIQKV IKDIKDADEA DLIFATTHMG HYADAQNGSN
APGDVAMARA VTAGDLHAII GGHSQNPVCM EPGTNDYADF TPGGDCTPDK QNGTYIMQAH
EWGKYVGQAD FEYFNDELHL ASYKLIPVNL KKKNDAGERV LIGEEITPDG TVLEILKQYQ
EKGQDQLNEV IATTAEKLEG ERAVVRFMQT NLGHLISTAH TSKVNADVGV MNSGGVRASI
EPGEITYKDV LTVQPFGNSI TKSTVTGAEL TEYLGAVASL QIDSGAYAQL TGVKMTVDCV
AKTVDISDVN GKGYDAAATY TFTVPSFNAA GGDGYPVLTP VMTGFVDAAV MYDFLKEKGS
IAAGEFAPTG DVVYENSMST DGCQVLSTQ