| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1943 |
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| Symbol | |
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| ID | 6116206 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 2389849 |
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| End bp | 2391450 |
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| Gene Length | 1602 bp |
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| Protein Length | 533 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641633446 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001760322 |
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| Protein GI | 170726296 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000658199 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00758396 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCGCTTTT TTTGTATCTC TATCATGCTT TTTATTTTAG GTTTGCTCGG CCCTTCGTTG
GCGCTAGCTG ATACTGCAAA CTTAATATCA GGGGCTAATG CAGCGGAAGA ACCTCATACT
GCATTGAGTG TCCATCAGCA GTTTCAATAT AAAGATAAGC ATAATAGAGA TACGCCGAAA
GGAACACTAG AGGGGTTCTT CAATGCCGCT TATGAGCAGG ATTTTGAGTT GGCGTCACAG
TATCTGGATC TGCGTTACCT GCCAGAAAAT ATGTCACAAG AGAAAGGTCC TGAATATGCC
ACCATGTTGC AGGCGATTAT TGACAGAAAT GTATGGATCA ACCTTGAGGA ATTAGATGAT
ACACCTCAAG GGGCAACTAA TGATAGTTTG CCCTCATACA GAGATATCTT TGGCCGAATA
AAGGTGGAGA GTGGTGAGGT GATGCTACTA CTTCAACGAG TGCCCTCTGA CAAGCGTTCG
ATTTGGAAGA TATCGAATGC CACTGTTGCT AAAATTCCAG AGCTTTATAG TCAACTCGGA
TATGGACCTA TTGTTGAGTG GTTTGTTGAG ACCATTCCAG AAGGGCGACT GTTTAAGATC
AATCTGTGGG AGTGGGCGTT ACTGCTCACA TACTTGCTGG CTGCATTTAT TATTGTGATT
CCAATCACCT TGTTGATTAA GTTAGTGCTG TTAAAGTCTA CTCTTAGTCT CAAGGTGGAG
CTTGGCTATA TTGCTTCAGG CCCATTGCGT TTTTTTCTTG CTGTGGTGCT TGATAGGGCT
TGGATAGCCC AAAGCAGTAT CTCTCCTCAT GCTCTGGAGG CTATTAATAC CGGTTTTTTA
CTGCTGATCT CGGTTATATG GTTGGTATGG TCTTCATTAG GTATTATGAG TGCAGGTTTA
AAGCAGCGTT TAATCGCTCA AGAGCATCAG CAAGGTGCAT CTTTATTGGG GCCTTTGACG
AATTTTGTTC GAGTGATTTT TATTGCCATC GCTTTTTTGG TTTGGCTAGA GTTTTTAGGA
TTTAATGCCA GTGCAATCGT GGCAGGAATG GGCATTGGTG GTGTTGCAAT TGCGCTCGCT
TCTAAACAGT CAATTGAAAA CTTTATTGGA ACCATCACTC TTTATTCTGC TGCCCCAATT
AAAGTGGGCA ATATTTGTCA GTTTGGCTCC ATTAAAGGGA CGGTTGAGGA GATTGGGTTA
CGTTGTACGC AAATTCGTAC ATTAGACAGA ACCTTAATTC ATGTGCCTAA TGCAAAATTA
GCTGAGATGG AGATTGAAAA TATCTCTGAG CGTGAGAAGA TTCGCTTTAA AGCTGATATT
CGGCTCGATT ATTTAACCCG TTCAGAGCAG CTAAAGGCTA TTATTTCAGA TATTACTGGA
ATGCTAGAAA ACCATGAGCT GATAGATGAA GACCCTTTGC GAGTTACCTT TCAAGGTTTT
GGATTACACG GGCTTCAAGT CAATATTTTT GCGTATGTTG GAACAACCAG TTTTCCGACT
TATCAGAAAG TTGCTCAGGA GTTACATCTG GCGATCATGG ATATCGTTGA GACCCATGGT
TCTAGAATTA TTCCTGTTGC GCCTATAGCT GCTAAAATTT AA
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| Protein sequence | MRFFCISIML FILGLLGPSL ALADTANLIS GANAAEEPHT ALSVHQQFQY KDKHNRDTPK
GTLEGFFNAA YEQDFELASQ YLDLRYLPEN MSQEKGPEYA TMLQAIIDRN VWINLEELDD
TPQGATNDSL PSYRDIFGRI KVESGEVMLL LQRVPSDKRS IWKISNATVA KIPELYSQLG
YGPIVEWFVE TIPEGRLFKI NLWEWALLLT YLLAAFIIVI PITLLIKLVL LKSTLSLKVE
LGYIASGPLR FFLAVVLDRA WIAQSSISPH ALEAINTGFL LLISVIWLVW SSLGIMSAGL
KQRLIAQEHQ QGASLLGPLT NFVRVIFIAI AFLVWLEFLG FNASAIVAGM GIGGVAIALA
SKQSIENFIG TITLYSAAPI KVGNICQFGS IKGTVEEIGL RCTQIRTLDR TLIHVPNAKL
AEMEIENISE REKIRFKADI RLDYLTRSEQ LKAIISDITG MLENHELIDE DPLRVTFQGF
GLHGLQVNIF AYVGTTSFPT YQKVAQELHL AIMDIVETHG SRIIPVAPIA AKI
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