| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1931 |
|---|
| Symbol | |
|---|
| ID | 6116194 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 2378891 |
|---|
| End bp | 2379508 |
|---|
| Gene Length | 618 bp |
|---|
| Protein Length | 205 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641633434 |
|---|
| Product | lysine exporter protein LysE/YggA |
|---|
| Protein accession | YP_001760310 |
|---|
| Protein GI | 170726284 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1280] Putative threonine efflux protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0747907 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGATT TTGCTCTACT TGCGGTTTTT CTGCCCACTT TTTTCTTTGT CTCAATCACT
CCGGGAATGT GCATGACACT CGCCATGACA TTAGGTATGA GTATTGGTGT TCGCCGTACC
TTATGGATGA TGATAGGTGA ACTTGTCGGT GTCGCTTTAG TCGCCATCGC AGCGGTCATG
GGCGTTGCAA GTATCATGCT TAACTACCCA CAAATCTTTG AGGTATTGAA ATGGGTAGGC
GGTATCTATT TAGCCTATAT CGGTGTTCAG ATGTGGCGTG CTAAAGGTAA GATGGCCAAG
CTAGATGAAC AATCTGCTAG GATTAGTAAT AGCACGCTTA TCTCACAAGG TTTTATCACT
GCGATTGCCA ACCCCAAAGG CTGGGCATTT ATGATCTCCC TGCTTCCCCC TTTTATCAAT
GTCGACAAGG AGCTTGCTCC TCAATTTGTC GCGCTACTCA GCATCATACT CTTCACTGAG
CTCATCAGCA TGTTAGCCTA CGCTGCTGGA GGAAAAAGCT TAAAGATCTT CTTAAGCCGT
GGGGATAATA TCAAATGGAT GAACCGGATA GCAGGCTCAC TTATGATAGG TGTTGGCTTC
TGGCTAGCCT TAGGTTAA
|
|---|
| Protein sequence | MPDFALLAVF LPTFFFVSIT PGMCMTLAMT LGMSIGVRRT LWMMIGELVG VALVAIAAVM
GVASIMLNYP QIFEVLKWVG GIYLAYIGVQ MWRAKGKMAK LDEQSARISN STLISQGFIT
AIANPKGWAF MISLLPPFIN VDKELAPQFV ALLSIILFTE LISMLAYAAG GKSLKIFLSR
GDNIKWMNRI AGSLMIGVGF WLALG
|
|---|
| |