Gene Swoo_1926 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1926 
SymbolcpdB 
ID6116189 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp2369295 
End bp2371358 
Gene Length2064 bp 
Protein Length687 aa 
Translation table11 
GC content45% 
IMG OID641633429 
Productbifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 
Protein accessionYP_001760305 
Protein GI170726279 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 
TIGRFAM ID[TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.267359 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00913306 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGATATGT TTAATAAAAA AGTTTTAGCG GTAGTGATCG CATCCACACT AGGGTTAGTT 
GCCTGTGGTT CAGATGATAA CAACGAACAG GTTGCAGCCG TACAGGTTGA CCTTAGAATT
CTTGAAACCT CAGATCTACA CACTAACATC ATGGATTATG ACTATTACAA AACAAAGTAT
GATCCAACCA TAGGCTTAGC AAGAACCGCT AGCCTAATCA AACAACAAGG CGCTGAGGTT
AACAACTTTG TTTTAGTTGA TAATGGTGAC CTGCTGCAAG GTAGTCCAAT GGGGGATTAT
GTTGCCGACA ATTTCAAACG CGATAACACC ATAGGTGGCA CACACCCTGC CTATAAAGCG
ATGAATACCC TAGGCTACTC TGTAGGTAAT ATTGGTAACC ACGAGTTCAA CTACGGGCTA
GATTTCTTAG AGGAAGCCCT AGCTGGTGCA AACTTCCCCT ATATCAATGC TAACGTATTA
TGTGAAGCTG ACTGCTGGGA AGGTAAAGCC AAGGGCGATA ACCTCTTCAC CCCTTACATC
ATCGAAGAGA AAACCGTCAT CGACAGCAAT GGCGATCAAC AAACCGTCAA AATTGGTTAT
ATCGGCTTTG TTCCTCCACA AATTCTACTT TGGGATAAAC AAAACCTTTC AGGCAAAGTA
ACTGTACTTG GGATTGTTGA AGCCGCAGAA AAGTTCATCC CTATGATGAA AGCTGAAGGT
GCGGATGTGA TTGTTGCCAT TCCTCACTCA GGTGTCGGCA CGCCATCAAA TCCGGTTGAT
GTTAACGATG AAAATGCCAC CTATGCACTC TCACTGGTTG AGGGGATTGA TGCAATCACC
TTTGGCCACA GCCACTCAGT TTTTCCATCA GCTACCTTTG AAGGATTGGA AAACGCTGAC
CTAGAGAAAG GAACAATCAA CGGTGTGGCA GCTGTAATGC CTGGTCGTTG GGGTGATAAC
TTAGGTATTG TCGATCTTAA ACTCGAGATG CAGAACGGCG CTTGGGTTGT CATCGACCGC
TCAGCAAAAG CATCACCGAT ATATGACAAA AATGCAGAAC AGCCTGAACT CGTCACTGCC
GATAATGGTA TTCGTGACGC TGTAGCACTT GAGCATCAAG GCACACTTAG CTACGTAGAT
CAGCCTATTG GTAAAGCCTC TGCTGATATG TATAGCTTCC TGACCTTAGT GCAGGATGAT
CCATCAGTGC AGATTGTCTC TGATGCGCAG ATAGCTAAAG TCAAAGCTAA CCTAACCGAC
GCATTAAAAG ATATTCCGGT GCTTTCTGCG GCTGCTCCAT TTAAAGCTGG CGGACGTCAC
AGCACCGCTG CTGACGCAGA CTCTTACGTG CAAGTACCAG CAGGAGATCT GACCTATAAG
AATGCCGCCG ATCTTTACCT CTATCCAAAT ACCATGGTTG CCGTTAAGCT TACTGGCGCA
GAGCTCAAAG ATTGGTTGGA GTGCAGTGCA AACCAGTTTA ATCAGATTGA TCCAAACATC
TCGACACCAC AAAACCTAAT TAACTGGGAC ACGCACCGAA CTTACAACTT CGATGTTATC
GATGGTGTGA CTTACAAAAT AGATGTCACT CAACCTACTA AGTTCGATGG GGATTGTAAG
CTTGTCAATG AAGATGCAAA CCGCATTGTT GACTTGGCTT ATACCCAAGA TGATACGGTA
TTCACCGGTG ACGAATTAGC TAAGAAAGAG TTTATCGTCG CAACCAATAA CTACCGCGCA
TTTGGTGGTA AGTTTGCAGG TACAGGAGCG GACTACGTCA TCATGGAGTT GCCAGACAGT
AATCGTGAGG CACTAGCTCA GTACATCACA GATGAAACAG AGACCAATGG AGAAGTGGAT
CCTTCTGCTG ACAATAACTG GGACTTTGTG ACGATCGATA CTGCCACTCA ATTAGATATC
CGCTTTGAAA CCCAAGACAG TGAACTTGCT GATAAATTTG TTATCGATAA CCAAGTTCGC
CCATTAACTA AACGCACAGA TTTAACCGAT GAGTTTGGCT TTGCCATCTA CAATATTGAC
CTAACCACAC CAGTGACTAA GTAG
 
Protein sequence
MDMFNKKVLA VVIASTLGLV ACGSDDNNEQ VAAVQVDLRI LETSDLHTNI MDYDYYKTKY 
DPTIGLARTA SLIKQQGAEV NNFVLVDNGD LLQGSPMGDY VADNFKRDNT IGGTHPAYKA
MNTLGYSVGN IGNHEFNYGL DFLEEALAGA NFPYINANVL CEADCWEGKA KGDNLFTPYI
IEEKTVIDSN GDQQTVKIGY IGFVPPQILL WDKQNLSGKV TVLGIVEAAE KFIPMMKAEG
ADVIVAIPHS GVGTPSNPVD VNDENATYAL SLVEGIDAIT FGHSHSVFPS ATFEGLENAD
LEKGTINGVA AVMPGRWGDN LGIVDLKLEM QNGAWVVIDR SAKASPIYDK NAEQPELVTA
DNGIRDAVAL EHQGTLSYVD QPIGKASADM YSFLTLVQDD PSVQIVSDAQ IAKVKANLTD
ALKDIPVLSA AAPFKAGGRH STAADADSYV QVPAGDLTYK NAADLYLYPN TMVAVKLTGA
ELKDWLECSA NQFNQIDPNI STPQNLINWD THRTYNFDVI DGVTYKIDVT QPTKFDGDCK
LVNEDANRIV DLAYTQDDTV FTGDELAKKE FIVATNNYRA FGGKFAGTGA DYVIMELPDS
NREALAQYIT DETETNGEVD PSADNNWDFV TIDTATQLDI RFETQDSELA DKFVIDNQVR
PLTKRTDLTD EFGFAIYNID LTTPVTK