Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1926 |
Symbol | cpdB |
ID | 6116189 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 2369295 |
End bp | 2371358 |
Gene Length | 2064 bp |
Protein Length | 687 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641633429 |
Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
Protein accession | YP_001760305 |
Protein GI | 170726279 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.267359 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00913306 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGATATGT TTAATAAAAA AGTTTTAGCG GTAGTGATCG CATCCACACT AGGGTTAGTT GCCTGTGGTT CAGATGATAA CAACGAACAG GTTGCAGCCG TACAGGTTGA CCTTAGAATT CTTGAAACCT CAGATCTACA CACTAACATC ATGGATTATG ACTATTACAA AACAAAGTAT GATCCAACCA TAGGCTTAGC AAGAACCGCT AGCCTAATCA AACAACAAGG CGCTGAGGTT AACAACTTTG TTTTAGTTGA TAATGGTGAC CTGCTGCAAG GTAGTCCAAT GGGGGATTAT GTTGCCGACA ATTTCAAACG CGATAACACC ATAGGTGGCA CACACCCTGC CTATAAAGCG ATGAATACCC TAGGCTACTC TGTAGGTAAT ATTGGTAACC ACGAGTTCAA CTACGGGCTA GATTTCTTAG AGGAAGCCCT AGCTGGTGCA AACTTCCCCT ATATCAATGC TAACGTATTA TGTGAAGCTG ACTGCTGGGA AGGTAAAGCC AAGGGCGATA ACCTCTTCAC CCCTTACATC ATCGAAGAGA AAACCGTCAT CGACAGCAAT GGCGATCAAC AAACCGTCAA AATTGGTTAT ATCGGCTTTG TTCCTCCACA AATTCTACTT TGGGATAAAC AAAACCTTTC AGGCAAAGTA ACTGTACTTG GGATTGTTGA AGCCGCAGAA AAGTTCATCC CTATGATGAA AGCTGAAGGT GCGGATGTGA TTGTTGCCAT TCCTCACTCA GGTGTCGGCA CGCCATCAAA TCCGGTTGAT GTTAACGATG AAAATGCCAC CTATGCACTC TCACTGGTTG AGGGGATTGA TGCAATCACC TTTGGCCACA GCCACTCAGT TTTTCCATCA GCTACCTTTG AAGGATTGGA AAACGCTGAC CTAGAGAAAG GAACAATCAA CGGTGTGGCA GCTGTAATGC CTGGTCGTTG GGGTGATAAC TTAGGTATTG TCGATCTTAA ACTCGAGATG CAGAACGGCG CTTGGGTTGT CATCGACCGC TCAGCAAAAG CATCACCGAT ATATGACAAA AATGCAGAAC AGCCTGAACT CGTCACTGCC GATAATGGTA TTCGTGACGC TGTAGCACTT GAGCATCAAG GCACACTTAG CTACGTAGAT CAGCCTATTG GTAAAGCCTC TGCTGATATG TATAGCTTCC TGACCTTAGT GCAGGATGAT CCATCAGTGC AGATTGTCTC TGATGCGCAG ATAGCTAAAG TCAAAGCTAA CCTAACCGAC GCATTAAAAG ATATTCCGGT GCTTTCTGCG GCTGCTCCAT TTAAAGCTGG CGGACGTCAC AGCACCGCTG CTGACGCAGA CTCTTACGTG CAAGTACCAG CAGGAGATCT GACCTATAAG AATGCCGCCG ATCTTTACCT CTATCCAAAT ACCATGGTTG CCGTTAAGCT TACTGGCGCA GAGCTCAAAG ATTGGTTGGA GTGCAGTGCA AACCAGTTTA ATCAGATTGA TCCAAACATC TCGACACCAC AAAACCTAAT TAACTGGGAC ACGCACCGAA CTTACAACTT CGATGTTATC GATGGTGTGA CTTACAAAAT AGATGTCACT CAACCTACTA AGTTCGATGG GGATTGTAAG CTTGTCAATG AAGATGCAAA CCGCATTGTT GACTTGGCTT ATACCCAAGA TGATACGGTA TTCACCGGTG ACGAATTAGC TAAGAAAGAG TTTATCGTCG CAACCAATAA CTACCGCGCA TTTGGTGGTA AGTTTGCAGG TACAGGAGCG GACTACGTCA TCATGGAGTT GCCAGACAGT AATCGTGAGG CACTAGCTCA GTACATCACA GATGAAACAG AGACCAATGG AGAAGTGGAT CCTTCTGCTG ACAATAACTG GGACTTTGTG ACGATCGATA CTGCCACTCA ATTAGATATC CGCTTTGAAA CCCAAGACAG TGAACTTGCT GATAAATTTG TTATCGATAA CCAAGTTCGC CCATTAACTA AACGCACAGA TTTAACCGAT GAGTTTGGCT TTGCCATCTA CAATATTGAC CTAACCACAC CAGTGACTAA GTAG
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Protein sequence | MDMFNKKVLA VVIASTLGLV ACGSDDNNEQ VAAVQVDLRI LETSDLHTNI MDYDYYKTKY DPTIGLARTA SLIKQQGAEV NNFVLVDNGD LLQGSPMGDY VADNFKRDNT IGGTHPAYKA MNTLGYSVGN IGNHEFNYGL DFLEEALAGA NFPYINANVL CEADCWEGKA KGDNLFTPYI IEEKTVIDSN GDQQTVKIGY IGFVPPQILL WDKQNLSGKV TVLGIVEAAE KFIPMMKAEG ADVIVAIPHS GVGTPSNPVD VNDENATYAL SLVEGIDAIT FGHSHSVFPS ATFEGLENAD LEKGTINGVA AVMPGRWGDN LGIVDLKLEM QNGAWVVIDR SAKASPIYDK NAEQPELVTA DNGIRDAVAL EHQGTLSYVD QPIGKASADM YSFLTLVQDD PSVQIVSDAQ IAKVKANLTD ALKDIPVLSA AAPFKAGGRH STAADADSYV QVPAGDLTYK NAADLYLYPN TMVAVKLTGA ELKDWLECSA NQFNQIDPNI STPQNLINWD THRTYNFDVI DGVTYKIDVT QPTKFDGDCK LVNEDANRIV DLAYTQDDTV FTGDELAKKE FIVATNNYRA FGGKFAGTGA DYVIMELPDS NREALAQYIT DETETNGEVD PSADNNWDFV TIDTATQLDI RFETQDSELA DKFVIDNQVR PLTKRTDLTD EFGFAIYNID LTTPVTK
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