| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1909 |
|---|
| Symbol | |
|---|
| ID | 6116172 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 2350771 |
|---|
| End bp | 2351325 |
|---|
| Gene Length | 555 bp |
|---|
| Protein Length | 184 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 641633412 |
|---|
| Product | OmpA domain-containing protein |
|---|
| Protein accession | YP_001760288 |
|---|
| Protein GI | 170726262 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3637] Opacity protein and related surface antigens |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0905316 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAAACAT TAACTATTGC AGCAGCTTCT CTACTCGCCA TTTTTGCATC AAGCAATGTG
GCTGCAGCCA ATGACCATAG TGGTTTTTAT GTGGGTGGCA GTTTAGGACA ACTAAAAGTA
AAAACAGAGG ATAGTGATAA TGGCTTAGGC TTTGGTGCCT ACGGTGGTTA TAACTTCAAT
GATTGGTTTG GTTTAGAAGC CAACATGTAT CTTTCAGGAG ATCTTGGTGG CAATGGTTAT
GATTTAGGTG CTGGTACGTT TGCTTTTACC CCCAAATTTA CTTACCAAAT TAATGACACC
TTTGCTGTGT ATGGCAAAGT AGGTATCGCT TCTATGGCTG TTGTGTATCG ACCTGATAGA
GGTATAGATG AAGACTTTAC TGGCTTTGGT TGGGTCTATG GTGTTGGTGT TAATGCCTCT
ATTACTGAGA ACCTTAACAT CCGTTTAGGC TATGATATTG TTAAAGGCGA TCTCGACTCT
GAGTATTCAT TCAGTGAGCA AAATGTGGAT ACTGATATCT CTAACTTTGC GCTAGGTATG
CACTACCAGT TTTAA
|
|---|
| Protein sequence | MKTLTIAAAS LLAIFASSNV AAANDHSGFY VGGSLGQLKV KTEDSDNGLG FGAYGGYNFN
DWFGLEANMY LSGDLGGNGY DLGAGTFAFT PKFTYQINDT FAVYGKVGIA SMAVVYRPDR
GIDEDFTGFG WVYGVGVNAS ITENLNIRLG YDIVKGDLDS EYSFSEQNVD TDISNFALGM
HYQF
|
|---|
| |