Gene Swoo_1899 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1899 
Symbol 
ID6116162 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp2338995 
End bp2339681 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content44% 
IMG OID641633402 
ProductABC transporter related 
Protein accessionYP_001760278 
Protein GI170726252 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.676555 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCAAAG TCAATGGATT AACTAAAGAG TACCAGATGG GCAATACCTC TGTGTTTGCA 
CTAAGAGGGG TAGAGTTTAC GATTAATCAC AATGAGTTTG TTGCCATCAT GGGACCATCA
GGTTCTGGTA AATCGACATT GATGAATATC ATAGGGTGTT TAGATAAACC TACTAGTGGT
AGCTATCAGT TAAACGAGCA AGAAGTTGCT AGTTTAGATG ATGATGCATT ATCAGCGGTT
CGCAACAAAG AGATAGGTTT CGTCTTTCAA AGTTTCCATC TATTACCGCG AATGAGTGCA
TTGCAAAATG TGTTGTTGCC ATTACGTTTC TCTAACCCTC CAAATCAAGA TAGCCAATAT
GCGAGTGAGT TATTAACTCG GGTGGGTCTA GGGACAAGGC AAGATCATAG ACCAAATCAA
CTGTCGGGTG GTCAGAGACA AAGGGTTGCT ATCGCTCGAG CTCTGGTTAA TCGTCCAGCC
ATTTTACTCG CTGATGAGCC AACTGGTGCC TTAGACAGTA AAACATCTGT TGAGATCATG
GATCTGTTTA CCGACCTGCA CAAAGCGGGA CAGACGATTA TTCTTGTCAC CCATGAAGAG
GAAGTTGCTG CTTATGCACA GCGAGTGATT CGCATGCGGG ACGGTCATAT TGTAGAGATT
GAAGACCGGA GCACCTATGC CGCTTGA
 
Protein sequence
MIKVNGLTKE YQMGNTSVFA LRGVEFTINH NEFVAIMGPS GSGKSTLMNI IGCLDKPTSG 
SYQLNEQEVA SLDDDALSAV RNKEIGFVFQ SFHLLPRMSA LQNVLLPLRF SNPPNQDSQY
ASELLTRVGL GTRQDHRPNQ LSGGQRQRVA IARALVNRPA ILLADEPTGA LDSKTSVEIM
DLFTDLHKAG QTIILVTHEE EVAAYAQRVI RMRDGHIVEI EDRSTYAA