| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1877 |
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| Symbol | |
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| ID | 6116140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 2319104 |
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| End bp | 2320570 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641633380 |
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| Product | nitrite transporter |
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| Protein accession | YP_001760256 |
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| Protein GI | 170726230 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2223] Nitrate/nitrite transporter |
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| TIGRFAM ID | [TIGR00886] nitrite extrusion protein (nitrite facilitator) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.108143 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00227018 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGGCGG AAAAATTTAA CCTATTCTCA TTTTCAGGCA AGATGAAGAT GATGCATATG
AGCTGGATGG CATTCTTTAT CTCATTTGTT GTTTGGTTTA ACGCAGCTCC GTTAATGAGC
GTCATTGCCG ACAGCCTAGG ACTGAGTAAA GAGCAGATAA AAACCCTGCT TATTCTTAAT
GTCGCTCTCA CCATCCCTGC ACGGATTATT ATTGGCATGG TGACGGATAA GTTTGGTCCA
AGGTTAACCT ATTCCGCCTT ACTTATTGTG TGCTCAATCC CCTGTTTTAT GTTTGCCTTA
GGAACCAGTT TTGAGCAGCT TGCTTTAGCT CGCTTTCTTC TTGGCTTTAT TGGTGCGGGT
TTTGTTATTG GAATACGTAT GGTCAGTGAG TGGTTTCCCG CTAATGAGCT TGGTACCGCA
GAGGGGATCT ATGGCGGCTG GGGCAACTTT GGTTCTGCCG CTGCAGCTTT TACCTTGCCT
GCGATTGCCC TTGTGTTTGG CGGTGAGGAT GGTTGGCGCT ATGCCATTGG TGCTACAGGG
GGACTGAGTT TACTCTTTGG TGTTATCTAC TTTCTTAATG TGAGCGATAC ACCTAAAGGT
TCAACCTATT TTAAGCCTAA AAAAGCGGGT GCATTAGAGG TGACAAGTAA AGCTGATCTG
GTGTTACTCG TTGTGATGAA GTTGCCTATG TATGCCACAT TAGCACTCTT GGCCTGGAAG
TTGTCCCCCG AGGGCGTCAA GATGTTCAGC CAAAGTAGTA CTGAGTTGAT CTATGGGCTG
TTAATACTCG TTCTGGCTAT CGATCTTTAT CTTACCTATC AAGTTAATAA ACATCTGTTC
GATGGGCCAG TACCTGAGTT TGAGCGATAT CCTTTTAAAC AGGTAGCAGT GCTCAATGTG
CTCTATTTTT CCACGTTTGG CTCGGAGCTG GCAGTTGTTT CTATGTTACC TCTCTTTTTT
GCAGAAACCT TCGAGCTGGG CTTAGCCCAA GCGGGGATGT TGGCATCGAG TTATGCGTTT
ATGAACCTGC TGTCTCGTCC TGGAGGAGGC TGGATAAGTG ATAGATTTGG AAGAAAGCCA
ACCTTAATGA TCTTAACCGC TGGTTTAGCT TTAGGTTATC TTGGGATGGC ACAGATAAAC
GATCAGTGGT CTCTGCCTTT GGCTGTGTTA ATGGTGATGA CCTGCTCCTT CTTTGTCCAA
GGTGGTGAAG GCGCCGTATT TGCTGCTGTT CCCTTGATTA AACGTAGGCT AACCGGCCAA
ATTGCTGGTA TGACAGGGGC TTACGGCAAT GTAGGGGCGG TATTTTTCCT GACGGTTTAC
TCCATGGTGT CGACCCAGCT GTTTTTTTAT GTCATTGGCG CGAGTGCGCT ATTTGGCTTG
GTTAGCTTGT TGTTTCTCAC TGAACCTAAA GGTCATATGA CTGAGGTGAA TGAGGATGGT
GAAGTGACCA TGATAAGTGT TAACTAA
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| Protein sequence | MKAEKFNLFS FSGKMKMMHM SWMAFFISFV VWFNAAPLMS VIADSLGLSK EQIKTLLILN
VALTIPARII IGMVTDKFGP RLTYSALLIV CSIPCFMFAL GTSFEQLALA RFLLGFIGAG
FVIGIRMVSE WFPANELGTA EGIYGGWGNF GSAAAAFTLP AIALVFGGED GWRYAIGATG
GLSLLFGVIY FLNVSDTPKG STYFKPKKAG ALEVTSKADL VLLVVMKLPM YATLALLAWK
LSPEGVKMFS QSSTELIYGL LILVLAIDLY LTYQVNKHLF DGPVPEFERY PFKQVAVLNV
LYFSTFGSEL AVVSMLPLFF AETFELGLAQ AGMLASSYAF MNLLSRPGGG WISDRFGRKP
TLMILTAGLA LGYLGMAQIN DQWSLPLAVL MVMTCSFFVQ GGEGAVFAAV PLIKRRLTGQ
IAGMTGAYGN VGAVFFLTVY SMVSTQLFFY VIGASALFGL VSLLFLTEPK GHMTEVNEDG
EVTMISVN
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