| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1835 |
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| Symbol | sdhA |
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| ID | 6116098 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 2268402 |
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| End bp | 2270168 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641633338 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001760214 |
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| Protein GI | 170726188 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0132672 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.110124 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTATTC CAGTTCGCGA GTTTGATGCA GTCGTTATTG GCGCCGGTGG CGCGGGTATG
CGAGCAGCAC TACAGATCTC TAAAGAGGGT AAAAGCTGTG CGCTTTTATC GAAAGTTTTC
CCAACCCGTT CCCATACTGT GTCAGCACAG GGTGGTATTA CCGTAGCACT TGGTAATGCC
CATGAAGATC ACTGGGAACA ACACATGTAC GACACCGTGA AAGGTTCCGA CTTTATCGGT
GATCAAGAAG CGATTGAGTT CATGTGTAAA ACGGGTCCTG AAGCTGTTAT TGAATTAGAG
CAGATGGGTC TTCCTTTCTC TCGTTTCGAA AACGGTAAGA TTTACCAGCG TCCATTTGGT
GGTCAATCGA AGAATTTTGG TGGCGAGCAG GCGGCACGTA CTGCAGCTGC AGCCGACCGT
ACGGGTCATG CACTGCTTCA TTGTCTTTAC CAGCAAAATG TGAAGCATAA GACCGAAGTT
TTCTCTGAAT GGTACGCTCT TGATTTAGTG AAAAATGAAG ACGGTGCCAT TGTTGGTTGT
ACTGCAATCG ATATCGAAAG CGGCGAAATT GTTTACTTCA AAGCTAAAGC GACCATTCTT
GCTACTGGTG GTGCGGGACG TATTTTCGCT TCGACCACTA ATGCGCATAT TAATACTGGT
GACGGTGTTG GCATGGCGAT GCGCGCTGGC GTTCAGATGC AAGATATGGA GATGTGGCAG
TTCCATCCAA CAGGTATCGC TGGTGCGGGC GTTCTGGTAA CAGAAGGCTG TCGTGGTGAA
GGTGGATACC TGTTAAATAA AGATGGCGAA CGCTTTATGG AGCGCTATGC TCCGAATGCG
AAAGATTTAG CGTCACGAGA TGTGGTTGCA CGCTCTATGA TGACTGAGAT CCGTGAAGGT
CGTGGTTTAG ATGGACCATT AGGCCCTCAC TGTTTACTTA AGCTTGATCA CTTAGGTAAA
GAAACACTCG AAGCGCGTCT TCCTGGTGTT TGTGAGCTGT CTCGTACCTT CGCTCATATC
GATCCTGCAG ATGGTCCAAT CCCTGTACTA CCAACGTGTC ATTACATGAT GGGTGGTCTT
CCTGCTAAAG TTAGTGGACA GGTTATCCGT CAAAATGGTG ATGGAACAGA GCAAGATGTC
GTTGGTTTGT TTGCGGTCGG TGAAATTGCT TGTGTATCTG TACACGGTGC TAACCGTCTC
GGTGGTAACT CGCTACTTGA TTTAGTGGTA TTTGGTCGTG CAGCTGGTCA GCATCTAGGT
AAAGCACTTG ATGAAACTGC GACACCTAAG GATGCAACTG AAGCTGATAT TGCTCAATCT
CTTGAACGTT TAAATCGTTG GGAAAGCAAT AAAGACGGTG AAGACCCAGC GCAAATCCGT
AAAGATTTAC AGCTTTGTAT GCAGCTTAAC TTCTCTGTAT TCCGTAGTGG CGATGCGATG
GCTGAAGGGC TTAAAGAGCT TAAAGCTATT CGTGAACGTT TAGCTAATGC TAAGCTTTCA
GATAACTCGA CAGAGTTCAA TACTCAACGC ATTGAGTGTC TTGAGCTGGA TAACTTGATG
GCAACGGCGA TAGCAACTGC TTATGCTGCA AACTATCGTA CCGAAAGTCG TGGTGCTCAT
TCACGTGAAG ATTTCTTAGA CCGTGATGAT GATAACTGGT TATGTCACAG TGTCTTCGAC
CCGGTTAGCG AAGAGATGAC TAAGCGTGAT GTGAACATGG AGCCTAAGCT TCGTGATGCC
TTCCCACCGA TTAAGCGTAC TTACTAA
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| Protein sequence | MSIPVREFDA VVIGAGGAGM RAALQISKEG KSCALLSKVF PTRSHTVSAQ GGITVALGNA
HEDHWEQHMY DTVKGSDFIG DQEAIEFMCK TGPEAVIELE QMGLPFSRFE NGKIYQRPFG
GQSKNFGGEQ AARTAAAADR TGHALLHCLY QQNVKHKTEV FSEWYALDLV KNEDGAIVGC
TAIDIESGEI VYFKAKATIL ATGGAGRIFA STTNAHINTG DGVGMAMRAG VQMQDMEMWQ
FHPTGIAGAG VLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLASRDVVA RSMMTEIREG
RGLDGPLGPH CLLKLDHLGK ETLEARLPGV CELSRTFAHI DPADGPIPVL PTCHYMMGGL
PAKVSGQVIR QNGDGTEQDV VGLFAVGEIA CVSVHGANRL GGNSLLDLVV FGRAAGQHLG
KALDETATPK DATEADIAQS LERLNRWESN KDGEDPAQIR KDLQLCMQLN FSVFRSGDAM
AEGLKELKAI RERLANAKLS DNSTEFNTQR IECLELDNLM ATAIATAYAA NYRTESRGAH
SREDFLDRDD DNWLCHSVFD PVSEEMTKRD VNMEPKLRDA FPPIKRTY
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