| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1815 |
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| Symbol | |
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| ID | 6116078 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 2244937 |
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| End bp | 2246193 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641633318 |
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| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
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| Protein accession | YP_001760194 |
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| Protein GI | 170726168 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.138304 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.103936 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCCAT TTTTATCAAT ATGGGTTGGT TGGCGTTTCT ACATGGCACG CCAATCTAAT
AGCCTGATTA GTTTTATCTC ATTTGCATCG ACCGCAGGTA TCGCCTTAGG TGTCGCGGTA
TTAATTGTTG TGCTCTCAGC CATGAATGGT TTTGAGAGTG AATTAGAAAA TAGGATGTTG
GGTGTTGTCT CCCATGGAGA GTTGAGCGGA GTTAATCAAC CTGTTAATAA CTGGCCCGCA
ATTGTTGAGG ACGCCAAGAA GGTGCCGGGG ATAGTGGCAT CAGCTCCCTT TATTCGTTTA
CAGGGACTCG TACAAAAGCC TGGCGGATTT CAAGGACTGA CCATTTTAGG AGTTGATACT
CAATATGAGC AGAAGGTCTC CAATATTGCC CAATTTATGC CAGCAGAAAC CTGGGAAAAG
CTAGCTGAGA CTGATAAAAA TAACATAGTG TTAGGTAGAG GTTTGGCAAA AAGTTTAGGC
TTAAACCTAG GTGACTCATT AAGCATGTAT ATGCCTAATG TCAACGCCGA TCCTACCGTG
AAGCGTATTG GCTCTGCAAA AAGTTATCGT TTCACTGTGG CAGGGATATT TGAGCTCGGA
GGAGAGCTGG ATCTCTCTAC TGCCTATGTG CCGATGCAGT ATGCGGCATC TATTTTAGCT
ATGGGTGAGC AGGTATCGGG TATTAGAATT AAAGCGGATA AAGTATTTGA GGCGCCGCGG
CTTATTCGTG AACTGGGCTT TAGCCAAGAT CAATACCTGT ACATCACTGA CTGGACTCGT
ACTCAGGGGC ATCTTTACCA AGATATACAA CTTGTTCGCA GTGTGATGTA TCTAGTACTG
GCTTTGGTGA TAGCCGTGGC TTGTTTTAAT ATTGTCTCGA CGTTAGTGAT GGCCGTACGG
GATAAACAAT CTGAGATCGC AATTTTGCTG ACTATGGGGA TGAAGCGCAG TGCGATTATG
ACAATCTTTA TTGTACAAGG TGCCCTTAAT GGAGTGCTGG GCTGTCTGCT TGGAGGCTTG
TTTGGTGTGC TTATCGCGGA AAACCTAAGT TGGATAGCCA AAGCGATAGA GGGGGCTTTA
GGCGTTAAAC TGCTCTCTGC TGATATCTAC TTTATCGACT TCCTCCCATC AGAGTTACAC
CTCGTTGACG TTGGGGTGGT GTTATTGTTA GCGCTGGTCA TGAGTTTAAT TGCGACACTT
TATCCTGCTT GGAAAGCGAG TCAAACACCG CCTGCAAGCG CATTAGCCGG CCGCTAA
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| Protein sequence | MNPFLSIWVG WRFYMARQSN SLISFISFAS TAGIALGVAV LIVVLSAMNG FESELENRML
GVVSHGELSG VNQPVNNWPA IVEDAKKVPG IVASAPFIRL QGLVQKPGGF QGLTILGVDT
QYEQKVSNIA QFMPAETWEK LAETDKNNIV LGRGLAKSLG LNLGDSLSMY MPNVNADPTV
KRIGSAKSYR FTVAGIFELG GELDLSTAYV PMQYAASILA MGEQVSGIRI KADKVFEAPR
LIRELGFSQD QYLYITDWTR TQGHLYQDIQ LVRSVMYLVL ALVIAVACFN IVSTLVMAVR
DKQSEIAILL TMGMKRSAIM TIFIVQGALN GVLGCLLGGL FGVLIAENLS WIAKAIEGAL
GVKLLSADIY FIDFLPSELH LVDVGVVLLL ALVMSLIATL YPAWKASQTP PASALAGR
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