| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1813 |
|---|
| Symbol | |
|---|
| ID | 6116076 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 2242892 |
|---|
| End bp | 2244142 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641633316 |
|---|
| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
|---|
| Protein accession | YP_001760192 |
|---|
| Protein GI | 170726166 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0198484 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.092514 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCGTT GGGCAACTAT GAATTTTGCG TTATCTGCAC ATATTGGCTT TCGTTATTGG
CGTGCAAGAA AGGCCAATGC GTTCGCTTCA TTTATCACTT TTTTTGCGGT TTCCGGTATT
TTGCTTGGAG TTGCAGCGCT CATTATTGTC AGCTCGGTTA TGAATGGTCT AGAGGGACAA
TTAAAGCAGC GTATTCTTGG GGCAGTGCCT CAATTGACGG TCAACAGTGA ACAAGCTCTC
ACTCATTGGC ATGCTAATGT GGCAGAGCTT AAAACGTTAC CAGGTGTTTT GGCTGCCACT
CCCAGTATTG CCACGCAAGC TATGGTCCAG TCACCCTCTA ATATTAGTGC CATTCAAGTG
TATGGTATCT ACCCTGAATA TGAAAAAGTG CTCGAAGGTA AGATGCAAGG TGTGTTAAAT
GCGCATTTTA GTCAGCTTAT ACCAGGAAAA TATCGGATCA TACTCGGCTC TGAGCTTGCC
AGACGTTTAG ATGTGTCCAT TGGCGAGAAG GTGAGAGTGC TCAGCGCAGA AGGTGTGGTT
TACTCCCCTT TTGGACCCGT GCCTAGCCAG CGTAAATTTG TGGTTGCAGG TATCTTTGAG
ATGGGCTCCC AAGTTGATGC AAGCTTGGCC TATGTTCATT ATGAGGACGC GCAGCGGTTA
ATGCGGCAAC CTCCTGGAGA GATAAAACAT CTGAGGCTAT ATCTAGCAGA TCCCTTTAAT
GCAGAGAGTT TAAGTAGTGA AGTAACGAAC CTGTTTAAGA GACAAGGTAT TGAAGTCACC
ACCTCTGACT GGCGAGACAC ATATGGTCAT CTGTTTAGCG CTGTGAAGAT GGAAAAGAAT
ATGATGTCTT TGATGTTAAG TCTGATTATT GCCGTTGCCG CGTTTAATAT TGTCTCTGCA
CTGGTGATGA TGGTGGTAGA CAAAACAACG GACGTTGCAG TATTGAAAAC TCAGGGGCTG
AGCACAGCGA ATGTGATGGG GATATTTATC TTTCAGGGAT CGCTCAATGC CATTATTGGT
CTGGTGCTAG GGCTTATTAT CGGTGTTGGG TTAACGCTTA ATTTAAATAC CATGATGAAT
TCGGTTGGGA TCTCTATCTT AGGGGCGGGT CAATCACTGC CTGTGCAAAT TGAGTGGAGC
CAGATGAGCT GGATAGTCAT TGGTACTTTA GTTATTACCT TCTGTGCCAC GCTATATCCA
GCATTTAGAG CGGCTAAAGT ACAACCTGCG ACAGCGTTGA GATATGAGTA A
|
|---|
| Protein sequence | MSRWATMNFA LSAHIGFRYW RARKANAFAS FITFFAVSGI LLGVAALIIV SSVMNGLEGQ
LKQRILGAVP QLTVNSEQAL THWHANVAEL KTLPGVLAAT PSIATQAMVQ SPSNISAIQV
YGIYPEYEKV LEGKMQGVLN AHFSQLIPGK YRIILGSELA RRLDVSIGEK VRVLSAEGVV
YSPFGPVPSQ RKFVVAGIFE MGSQVDASLA YVHYEDAQRL MRQPPGEIKH LRLYLADPFN
AESLSSEVTN LFKRQGIEVT TSDWRDTYGH LFSAVKMEKN MMSLMLSLII AVAAFNIVSA
LVMMVVDKTT DVAVLKTQGL STANVMGIFI FQGSLNAIIG LVLGLIIGVG LTLNLNTMMN
SVGISILGAG QSLPVQIEWS QMSWIVIGTL VITFCATLYP AFRAAKVQPA TALRYE
|
|---|
| |