| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1803 |
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| Symbol | |
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| ID | 6116066 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 2228583 |
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| End bp | 2231303 |
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| Gene Length | 2721 bp |
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| Protein Length | 906 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641633306 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001760182 |
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| Protein GI | 170726156 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0789615 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000387309 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAGCCAA TTTACAAATT TTTGAGACTT TTTGGCGCAG ATCATTCTAT GGGTAAATCG
CTAGTTATTG TCGAATCACC GGCCAAAGCC AAGACTATTA ATAAATATCT CGGCAAAGAT
TACATCGTGA AATCGAGTGT GGGTCATATT CGTGACCTAC CAACATCCTC CACTGCTGAA
GCGAACGTGG CGACTAAAAC GCCTGCTGAA GTCAGGAAGA TGTCTCCTGA AGAGAAAGCT
ATATATAAGA GTAAAAGAGC GAAACAGGCG CTAGTTACTC GTATGGGGGT TGATCCTGAA
AATGGCTGGA AGGCCAAGTA CCAGACTCTT CCCGGTAAAG AGAAAGTGGT TAAAGAGTTG
CAAGCATTAG CTGCAAGTGC TGACCATATC TTTCTCGCAA CCGATTTGGA TAGAGAGGGA
GAGGCTATTG CCTGGCATCT TCAAGAGGTG ATTGGTGGAG ACGCATCTCG TTATCAACGA
GTCGTGTTCA ACGAGATCAC TAAATCCGCT ATCCAAGATG CTTTTAGTAA ACCTGCCACA
CTTGATACGA ATATGGTGAA TGCGCAACAA GCGCGCCGTT TCCTTGATCG TGTCGTTGGT
TTTATGGTTT CTCCTCTGCT TTGGAAAAAA GTGGCGAGAG GACTTTCGGC TGGTCGTGTT
CAGTCGGTTG CGACTCGTCT AGTGGTTGAG AAAGAGGGTG AGATTAAAGC TTTTGTTCCT
GAGGAGTTTT GGGATATACA CGCCAATTTA ACAACGCTTG CAAATGACGC GTTGAAGATG
GAAGTGGTTA AGTTCCAGGA AAAAGCGTTT AACCCAGTTA ATGAGCTGCA AGCTCAAACG
GCTGTGAGTG CTTTATCACA GTCAAGCTTT GTGGTTGCAG CTCGTGAAGA TAGGGCAACG
TCTAGTAAAC CTTCAGCGCC TTATATCACA TCGACATTGC AGCAGGCTGC AAGTACCCGT
TTAGGTTTTG GTGTAAAGAA AACCATGATG ATGGCTCAAC GTCTTTATGA GGCGGGTCAT
ATTACCTATA TGCGTACAGA TTCAACCAAC TTGAGTCAGG AAGCGGTAGA CAATGTCCGT
GAAATGATTG GCAAAGAGTA CGGCGATAAA TATCTGCCTG ATGCGCCAAT CCGTTACGGA
AGCAAAGAGG GAGCGCAAGA GGCACACGAA GCTATTCGTC CTTCAGATGT ATCCGTTCAT
GCCGCTGGTA TGAAAGATAT GGAGCGTGAC GCGCAGCGAC TTTATGAGTT GATCTGGCGT
CAGTTTGTTT CTTGCCAGAT GACACCTGCT AAATATGATG CGACTCGTTT AACTGTCAAA
GCGGGTGAAT ATGAGCTTAA AGCAACGGGT CGAACACTAC GTTTTGATGG TTGGACACGA
GTTCAAACAG CCGTTAAAAA GAAAAATGAA GAGGATAATA CCCTGCCAGT CGTGGCTAAA
GGTGATGTAC TCTCTTTAGA GGAGTTACTG CCTAAGCAGC ACTTTACTAA GCCGCCTGCT
AGATACAGTG AGGCTTCATT AGTTAAAGAG TTAGAAAAGC GCGGTATTGG CCGTCCATCT
ACCTACGCAA CGATTATCTC AACCATACAA GACCGTGGTT ATGTAAAAGT TGAAAATCGC
CGTTTCTATG CTGAAAAGAT GGGTGAGATT GTCAGTGAAA GTTTGATTGG CAGCTTTAAA
GAGCTGATGA GCTACGACTT TACTGCCAGC ATGGAGCAGA CCCTTGATGA TGTGGCACAG
GGTGAGCTCG AGTGGAAAAA AGTGCTTGAT GGTTTTTATC AAGACTTGAC CAAACAGCTT
GATCAAGCAG AGCTTGCACC GGAAGAGGGC GGAATGCGCC CGAATGAGAT GGTGCTTACA
GACATCAAGT GTCCGACTTG TGGCAGACCT ATGGGGATCC GAACTGGTAC CACAGGGGTG
TTCCTTGGTT GTTCAGGTTA TGCGTTGCCG CCTAAAGAGC GCTGCAAAAC CACCATGAAC
CTAACCGCAG GTGAAGAAGC GGTCAGTGAA AATAGTGAAG ATGCAGAAAC CGATGCGTTA
CGTGCTAAAC ATCGCTGTGG CGTCTGTGGT ACAGCCATGG ACAGTTATTT AATTGATGAA
ACTCGTAAGC TTCATGTATG TGGTAATAAT CCAATCTGTG GTGGCTATGA GGTTGAGTTA
GGTCAATTTA AGATCAAGGG CTATGAGGGA CCCATCATTG AGTGCGATCG TTGCAGTAAT
GATATGGAGT TGAAAAATGG TCGCTTTGGT AAGTACTTTG GTTGTACTAA CTCTGAATGT
AAGAATACTC GTAAGCTGCT AAAGAGTGGT GAAGCTGCGC CGCCAAAGGA AGATCCTATT
CATCTTCCTG AGTTAAAATG TACTAAGTCA GATGGCTACT TCGTATTAAG AGATGGTGCT
GCCGGTATCT TTATGGCTGC AAGTACCTTC CCTAAATCAC GTGAGACTCG TCCGCCATTA
GTTGAAGAAC TAGTGAAGTA CCGTGAGCTA TTATGGCCTA AATATGCTTA TTTAGCCGAT
GCTCCGGTTG AAGATGATGA TGGTAACAAG TCTACGGTGC GCTTTAGTCG CAAGACCAAG
GAGCAGTACG TTGCAACAGA GGTTGATGGA AAAGCGACTG GCTGGACATC AAAATTTGTT
GATGGCAAAT GGGTGACTGA ATCTAAAAAG AAAGCCAAGC CTAAAGCGAA ACCTAAAGCT
AAGGCGAAAG CCAAGAGCTA A
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| Protein sequence | MEPIYKFLRL FGADHSMGKS LVIVESPAKA KTINKYLGKD YIVKSSVGHI RDLPTSSTAE
ANVATKTPAE VRKMSPEEKA IYKSKRAKQA LVTRMGVDPE NGWKAKYQTL PGKEKVVKEL
QALAASADHI FLATDLDREG EAIAWHLQEV IGGDASRYQR VVFNEITKSA IQDAFSKPAT
LDTNMVNAQQ ARRFLDRVVG FMVSPLLWKK VARGLSAGRV QSVATRLVVE KEGEIKAFVP
EEFWDIHANL TTLANDALKM EVVKFQEKAF NPVNELQAQT AVSALSQSSF VVAAREDRAT
SSKPSAPYIT STLQQAASTR LGFGVKKTMM MAQRLYEAGH ITYMRTDSTN LSQEAVDNVR
EMIGKEYGDK YLPDAPIRYG SKEGAQEAHE AIRPSDVSVH AAGMKDMERD AQRLYELIWR
QFVSCQMTPA KYDATRLTVK AGEYELKATG RTLRFDGWTR VQTAVKKKNE EDNTLPVVAK
GDVLSLEELL PKQHFTKPPA RYSEASLVKE LEKRGIGRPS TYATIISTIQ DRGYVKVENR
RFYAEKMGEI VSESLIGSFK ELMSYDFTAS MEQTLDDVAQ GELEWKKVLD GFYQDLTKQL
DQAELAPEEG GMRPNEMVLT DIKCPTCGRP MGIRTGTTGV FLGCSGYALP PKERCKTTMN
LTAGEEAVSE NSEDAETDAL RAKHRCGVCG TAMDSYLIDE TRKLHVCGNN PICGGYEVEL
GQFKIKGYEG PIIECDRCSN DMELKNGRFG KYFGCTNSEC KNTRKLLKSG EAAPPKEDPI
HLPELKCTKS DGYFVLRDGA AGIFMAASTF PKSRETRPPL VEELVKYREL LWPKYAYLAD
APVEDDDGNK STVRFSRKTK EQYVATEVDG KATGWTSKFV DGKWVTESKK KAKPKAKPKA
KAKAKS
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