| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1775 |
|---|
| Symbol | |
|---|
| ID | 6116038 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 2198053 |
|---|
| End bp | 2198514 |
|---|
| Gene Length | 462 bp |
|---|
| Protein Length | 153 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641633278 |
|---|
| Product | BadM/Rrf2 family transcriptional regulator |
|---|
| Protein accession | YP_001760154 |
|---|
| Protein GI | 170726128 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1959] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator)
[TIGR02010] iron-sulfur cluster assembly transcription factor IscR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.175223 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000151325 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTTA CATCAAAAGG TCGGTATGCT GTTACAGCCA TGTTAGATGT TGCTATGCAT
TCAACCGCTG GACCTGTTCC GTTGGCCGAT ATTTCTGAAC GTCAGGGGAT ATCACTTTCT
TACCTCGAAC AACTTTTCGC AAAACTCAGA AAGCAAGGAT TGGTTTCTAG TGTCAGAGGA
CCAGGCGGTG GTTACCGTTT AGGCGCTGAT GCAGGAGAGA TATCTGTTGG TATGGTGGTA
CGTGCAGTCG ATGAGTCTGT CGATGCTACC CGTTGCCAAG GGCAAGGAAA CTGTCAAAGC
GGAACTCGCT GTCTTACCCA TTCACTTTGG GGAGATCTGA GTAAGCAGAT TTCTGATTTT
TTAAATGGTA TTAGTCTTGC GGGTTTAATG ACGAAACGAG ATGTACAATT TATCTCTATT
AAACAAGATG AAATACAACA GGAACAAAGA GTAACACTAT AA
|
|---|
| Protein sequence | MKLTSKGRYA VTAMLDVAMH STAGPVPLAD ISERQGISLS YLEQLFAKLR KQGLVSSVRG
PGGGYRLGAD AGEISVGMVV RAVDESVDAT RCQGQGNCQS GTRCLTHSLW GDLSKQISDF
LNGISLAGLM TKRDVQFISI KQDEIQQEQR VTL
|
|---|
| |