Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1758 |
Symbol | secD |
ID | 6116021 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 2182926 |
End bp | 2184776 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641633261 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001760137 |
Protein GI | 170726111 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000231591 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0025184 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGTTAAATA AATATCCAAT GTGGAAGAAC CTGATGGTGA TGATTATCAT CGCAGTAGGT TCTTTCTATG CGATTCCAAA TCTCTTCGGG GAAGACTACG CTGTACAGGT TGTCGCTACC CGTGGTGCTG AGGTTACTGC AACGACTCAG TCGACCGTAA ACGATATTCT TGCAAGCAAA AATATCGAGG TAAAACGTTC TGAACTTGAA AATGGACAAT TGCTTGTTCG TGTCAATAAC GGCGAGCAAC AACTGTTAGC AAAAGAAGCG ATTATCGAGT CTCTAGGTGA TAAATACATC GTCGCCTTAA ACTTAGCTCC AAAGACGCCA CAGTGGCTAG AATCAATGGG CGGAAGTCCA ATGAAGTTAG GTCTGGATCT ACGTGGTGGT GTGCACTTCT TAATGGAAGT GGATATGGGC GAAGCGATCC GTAAGATGAC TGAAGCCAAG ATGTCAGATT TTAGAACCGA TCTTCGTGGT GAAAAAATCC GATATGCAGG TATTCGAAAT AGCGCTAAAG GTATCGAGAT TAAGTTCCGT GATGAGGAAA ACTTAGGCAG AGCTGAACGT TTTCTAAAGA CTCGCGGTAA TGACATGGTC TTTAGAGATA TCTCATCTGG CGGTAATTAC CTGTTACTGG CAAATCTTAG CGAAGCTTAT GTTAAGCAAG TGAAAGAGGA AGCACTGCAG CAAAACATCA CCACGATCCG TAATCGTGTG AATGAGCTAG GTGTAGCCGA GCCTGTTGTA CAGCGTCAAG GTGCTGAGCG TATTATCGTT GAACTTCCAG GTGTTCAAGA CACGGCTCGT GCTAAAGATA TCTTAGGTGC AACTGCGTCA ATTGAGTTCC ACATGGTTGA CGAGAAAGCC GATGCAGCTG CCGCTGCAAG TGGCCGCATC TCACCAAGTT CGCAGGTGTA TAACCGCCGT AATGGTGGCC AAGTTGTGCT GCATAAAGCG GTTATGTTGA CCGGTGATCA TATTCAGGGC GCACAGCCAA GTTTCGATGA ATACAGCCGT CCTCAGGTAA GTATTAACTT AGATTCTAAA GGCGGTTCTA TCTTCTCAAA TGTGACTAAG GACAACATTG GTAAACCAAT GGCGACCCTG TTTATTGAGT ATAAAGATAA CGGCGAAAAG AATCCTGACG GCAGCATCAA GATGCAGAAG ATTGAAGAGG TGATCTCAGT TGCCACTATT CAAGCACGTC TTGGTCGTAA CTTTGTTATC ACAGGTCTTG AGCATGCAGA AGCGCAAAGC TTAGCTCTAC TACTTCGTGC TGGTGCCTTG ATTGCGCCTG TGACAATCGT AGAAGAGCGC ACCATTGGCC CAAGCCTAGG TGCTGAAAAT ATTCAAAACG GTATGCAAGC GATGATCTGG GGCATGGCCG TAGTACTCAT CTTTATGTTG GTGTACTACC GTGGTTTTGG TCTTATTGCG AACTTAGCTC TAACGGCTAA CTTGGTGATG GTTGTTGGCG TTATGTCGAT GATCCCAGGT GCCGTGCTGA CCCTACCAGG TATTGCGGGT ATGGTGCTAA CCGTGGGTAT GGCTGTAGAT GGTAACGTTC TAATTTATGA GCGTATCCGT GAAGAGCTAC GTAACGGCCG CAGTGTGCAA CAAGCGATCC ATGAAGGTTA TGGCAACGCG TTTTCAACCA TCGCCGATGC GAACATCACC ACCTTTATGA CGGCATTGAT TCTGTTTGCC GTGGGTACTG GTGCTGTTAA AGGTTTTGCT GTCACCTTGA TGATTGGTAT TGCGACGTCA ATGTTCACTT CTATCGTGGG TACTCGCTCA ATAGTTAACG CTATTTGGGG TGGTAAACGC GTTAAGAAAC TATCTATATA A
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Protein sequence | MLNKYPMWKN LMVMIIIAVG SFYAIPNLFG EDYAVQVVAT RGAEVTATTQ STVNDILASK NIEVKRSELE NGQLLVRVNN GEQQLLAKEA IIESLGDKYI VALNLAPKTP QWLESMGGSP MKLGLDLRGG VHFLMEVDMG EAIRKMTEAK MSDFRTDLRG EKIRYAGIRN SAKGIEIKFR DEENLGRAER FLKTRGNDMV FRDISSGGNY LLLANLSEAY VKQVKEEALQ QNITTIRNRV NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKDILGATAS IEFHMVDEKA DAAAAASGRI SPSSQVYNRR NGGQVVLHKA VMLTGDHIQG AQPSFDEYSR PQVSINLDSK GGSIFSNVTK DNIGKPMATL FIEYKDNGEK NPDGSIKMQK IEEVISVATI QARLGRNFVI TGLEHAEAQS LALLLRAGAL IAPVTIVEER TIGPSLGAEN IQNGMQAMIW GMAVVLIFML VYYRGFGLIA NLALTANLVM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EELRNGRSVQ QAIHEGYGNA FSTIADANIT TFMTALILFA VGTGAVKGFA VTLMIGIATS MFTSIVGTRS IVNAIWGGKR VKKLSI
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