| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1741 |
|---|
| Symbol | |
|---|
| ID | 6116004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 2163698 |
|---|
| End bp | 2164828 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641633245 |
|---|
| Product | sodium ion-translocating decarboxylase, beta subunit |
|---|
| Protein accession | YP_001760121 |
|---|
| Protein GI | 170726095 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1883] Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit |
|---|
| TIGRFAM ID | [TIGR01109] sodium ion-translocating decarboxylase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.353254 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGGAT TACTTACACT ATGGCACGAC ACTGGATTAT ATAACTTTCA GATTGGTCAG
CTTATCATGA TGTTTATTGG CGGGTTATTA TTGTATCTAG CAATAAGTAA GCGTTATGAG
CCATTACTAT TATTGCCCAT TGGTTTTGGC GCGATTTTGG CTAATATTCC AATGGCTGGG
TTTACTGAAG AAGGCGGACT TCTTTGGTAT ATCTATCATA TCGGAATTGA AACCGGCGTA
TTTCCGTTGA TTATTTTCAT GGGCGTTGGT GCGTTGACTG ATTTTGGTGC GCTAATTGCC
AATCCCAAAG TGTTGCTTTT AGGCGCAGCA GCCCAGTTTG GGATATTTTC GACCTTGTTC
GGTGCGATAG CCTTAAATAT GGTACCGGGA TTTGAATTTA GCTTAAGTGA TGCTGCAGCT
ATCGCCATTA TTGGCGGAGC AGATGGTCCT ACAGCCATTT TTCTGGCCTC GCGACTGGCA
CCAGATTTAT TAGGTGCTAT TGCGGTTGCA GCTTATTCTT ACATGGCATT AGTGCCCTTA
ATCCAACCAC CAATAATGAA AGCGTTGACG ACTCATGAAG AACGTTCAAT TGTGATGGAA
CAGATGCGGG ATGTGTCAAA GATAGAAAAA ATAATCTTCC CATTAATGGT GCTTGCTCTA
ACGGTGATGT TTTTACCTGC AGCCACGCCA TTGGTTGGGA TGTTCTGTCT TGGAAATATA
ATGCGAGAGT CAGGTGTCGT CGATCGTCTT AGTAGCACTG CACAAAATGA ATTGATTAAT
ATTGTGACCA TTTTTCTTGG ACTGGCCGTT GGCTCAAAGC TATCGGCTGA AAAATTTCTT
AATCTTGAAA CTTTAGGGAT CCTTGCCCTT GGCGCTATCG CTTTCAGTAT AGGTACAGCG
TCAGGGGTAA TGATGGCGAA GTTGATGGGG CGTTTTTCTC GCTCGCCAAT CAACCCATTG
ATCGGTGCTG CTGGTGTGTC GGCGGTACCT ATGGCGGCGC GGGTTGCCAA TAGAGTTGGA
TTAGAGGCCA ATCCACATAA TTTCCTATTA ATGCATGCCA TGGGGCCAAA TGTTGCTGGT
GTACTCGGTT CTGCGGTTGC AGCGGGTATA TTGCTGGCAA TCATTGGTTG A
|
|---|
| Protein sequence | MEGLLTLWHD TGLYNFQIGQ LIMMFIGGLL LYLAISKRYE PLLLLPIGFG AILANIPMAG
FTEEGGLLWY IYHIGIETGV FPLIIFMGVG ALTDFGALIA NPKVLLLGAA AQFGIFSTLF
GAIALNMVPG FEFSLSDAAA IAIIGGADGP TAIFLASRLA PDLLGAIAVA AYSYMALVPL
IQPPIMKALT THEERSIVME QMRDVSKIEK IIFPLMVLAL TVMFLPAATP LVGMFCLGNI
MRESGVVDRL SSTAQNELIN IVTIFLGLAV GSKLSAEKFL NLETLGILAL GAIAFSIGTA
SGVMMAKLMG RFSRSPINPL IGAAGVSAVP MAARVANRVG LEANPHNFLL MHAMGPNVAG
VLGSAVAAGI LLAIIG
|
|---|
| |