| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1735 |
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| Symbol | |
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| ID | 6115998 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 2157756 |
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| End bp | 2159042 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 641633239 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001760115 |
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| Protein GI | 170726089 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.242246 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTAGCTT TTACTTTAAT AGTTTTGTTA GTGTTGTTGG CCCTAAGTAT ACCTATTGCT
TCATCACTTG GTATATTGGC ATTCTCATTA GATTCAAAGT ACTCATCATT ACCTTTATAT
AAGGCTGTTG GTGAAATAGC TTGGTCATCA AGTACTGACT TTTTATTACT AGCAATTCCT
TTGTTTATCC TTTTAGGAGA AATAATGCTT CGTTCTGGAA CCGCAGAACG TATGTATGAT
GGTCTGGTAA AATGGATCTC TTGGTTACCT GGTGGCTTAC TACATTCGAA TATAGGTGCC
TGTGCATTAT TTGCTGCGAC ATCAGGCTCA AGTGTTGCTA CTGCCGCAAC TGTAGGAACA
GTTGCTTTGC CACAAATAAA AAAACAAAAA TATAATGAAT CCCTGTTTTT AGGTACTTTA
GCCGCAGGAG GTACATTAGG AATATTGATA CCACCGTCTA TCAATATGAT TATTTATGGC
GTATTAACTG ATACATCAGT ACCTAAGCTA TATATGGCAG GCATTATACC TGGCATTGTG
TTAGCTGGAT TGTTTACTTT ATTAATCATT GTTCTATGTA GTTGTAAAAA ATCACTTGGA
GGAGAGTCTT TACATTATTC ATGGTCAGGA AAATTATCAA GTCTACCATC CTTGTTACCA
CCATTATTTA TATTCATTAT CGTGGTTGGT GCAATATATG GTGGCTTTGC TACACCGACA
GAGGCTGCTG CACTAGGCGT TGTGGGTTCA TTGGGGATAG CTTTTAAACA GGGGAAGCTA
AGTTTCTCAA TGCTAAAGTT AGCGCTTGAG GGAACTGTAA AAACGTCATC TATGGTTCTG
CTCATTATTA TTTGTGCTTA CTTTCTTAAT TTTGTATTGG CCGGAATAGG TTTAACTGAT
GAAATCAATA GAATTATAGT TGAATTAGAG TGGAGCCCTA CCCAAACAAT TTTAGCTATT
ATTATTTTCT ACTTAGTGCT TGGTTGCTTT ATGGAAACAT TGTCAATGAT GATAACAACC
GTACCAATAA TGGCACCGAT AGTTATTGGT ATGGGATATG ATCCTATATG GTTTGGAATA
TTGTTGATGG TGTTGTTGGA AACTGCACTA ATATCGCCGC CAATTGGGTT GAACTTATAT
GTGGTTCAAG GTGTTCGAGA GCGAGGTGAT ATATCCGATG TTATGTTAGG TGTGATTCCT
TTTTTCATGG CGATGTTAGC TATGATTGTA TTGATAGTAT TTATTCCTGA AATGGTAATG
TGGCTTCCTG AGCTTATTTA TAATTAA
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| Protein sequence | MLAFTLIVLL VLLALSIPIA SSLGILAFSL DSKYSSLPLY KAVGEIAWSS STDFLLLAIP
LFILLGEIML RSGTAERMYD GLVKWISWLP GGLLHSNIGA CALFAATSGS SVATAATVGT
VALPQIKKQK YNESLFLGTL AAGGTLGILI PPSINMIIYG VLTDTSVPKL YMAGIIPGIV
LAGLFTLLII VLCSCKKSLG GESLHYSWSG KLSSLPSLLP PLFIFIIVVG AIYGGFATPT
EAAALGVVGS LGIAFKQGKL SFSMLKLALE GTVKTSSMVL LIIICAYFLN FVLAGIGLTD
EINRIIVELE WSPTQTILAI IIFYLVLGCF METLSMMITT VPIMAPIVIG MGYDPIWFGI
LLMVLLETAL ISPPIGLNLY VVQGVRERGD ISDVMLGVIP FFMAMLAMIV LIVFIPEMVM
WLPELIYN
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