| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1724 |
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| Symbol | |
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| ID | 6115965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 2141929 |
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| End bp | 2143326 |
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| Gene Length | 1398 bp |
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| Protein Length | 465 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641633206 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001760104 |
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| Protein GI | 170726078 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.181142 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATCG CTACTCTGTT TATCACCTTA TTAATCTGCA TGATGTTAGG CATGCCGATC
GCTATCGCCC TTGGTTTCTC TAGCATGTTA ACCATCTTGC TATTTTCAGA TGATTCGTTG
GCATCAGTTG CGCTCAAGCT CTATGAAGCC ACATCTGAGC ATTACACACT ACTCGCAATC
CCCTTCTTCA TTCTGTCATC GGCCTTTCTG TCCACTGGCG GCGTTGCTAG GCGAATTATC
GACTTTGCTA TGGATAGCGT TGGCCATATT CGTGGAGGCC TTGCTATGGC CTCTGTGATG
GCTTGTATGC TATTTGCTGC AGTTTCAGGA TCCTCTCCTG CAACCGTTGC CGCCATCGGC
TCAATCGTTA TCGTCGGCAT GGTAAGAGCT GGATACCCAG AGAGGTTTGC TGCGGGAGTT
ATCACCACCT CAGGCACGCT AGGCATTCTC ATCCCCCCTT CCATTGTCAT GCTGGTCTAC
TCAGCAGCAA CAGAGGTTTC CGCCGCACGC ATGTTTATGG CGGGTTTAGT TCCAGGGTTA
ATGATGGGTC TGCTACTGAT GCTAGCTATC TATATCGTTG CCAGAGTAAA AAACCTGCCA
TCACGACCCT TTCCAGGCTT TAAAGCATTA AGTATTTCCA GCGCCAAAGC TATGGGCGGG
TTAGCACTTA TTCTCATTGT ACTCGGTTCT ATCTATGGCG GAGTGGCGAG CCCAACAGAA
GCCGCAGCCG TGGCGTGTGT GTACGCTTAC TTTATTGCTG TTTTTGGCTA CCGAGATATA
GGACCGCTGA AAAATGTCCC ATGGCAAAAA CAGCAAGAGT CATTCGTTAC TGCAGGTGTG
AGAAATATCG GCTATATGAT GCTTGCGCTA TTGAAAACTC CAACAGATAA AGAGATCCGT
CACGTTGTAC GAGATGGGGC TAAAGTCAGT ATCATGTTAC TGTTTATCAT TGCAAATGCG
ATGTTATTTG CCCATGTACT GACGACTGAA CGTATACCTC ATATCATCGC TGAAGCCATT
GTAGGATTAG GTTTACCAGC ATGGGGATTT CTGATCATAG TCAATATCCT ACTGCTAGCA
GCTGGCAACT TTATGGAGCC ATCGGCTATC TTGCTCATTA TGGCACCCAT TCTATTTCCG
ATCGCAACTC AGCTAGGCAT AGATCCAATA CATCTGGGCA TCATTATGGT GGTGAATATG
GAGATAGGTA TGTTAACGCC GCCAGTAGGA TTGAACCTCT TCGTCACAGC TGGGATCACA
GGGAAAAGCA TGGGCTGGGT GATTAAATCC TGTATTCCAT GGTTAGGGCT ACTATTGATT
TTCCTCATCT TGATCACGTA TGTACCGCAG ATATCGCTAT TCTTTCCCGA ATATATCGAT
AAATTAAACG GTTACTAA
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| Protein sequence | MTIATLFITL LICMMLGMPI AIALGFSSML TILLFSDDSL ASVALKLYEA TSEHYTLLAI
PFFILSSAFL STGGVARRII DFAMDSVGHI RGGLAMASVM ACMLFAAVSG SSPATVAAIG
SIVIVGMVRA GYPERFAAGV ITTSGTLGIL IPPSIVMLVY SAATEVSAAR MFMAGLVPGL
MMGLLLMLAI YIVARVKNLP SRPFPGFKAL SISSAKAMGG LALILIVLGS IYGGVASPTE
AAAVACVYAY FIAVFGYRDI GPLKNVPWQK QQESFVTAGV RNIGYMMLAL LKTPTDKEIR
HVVRDGAKVS IMLLFIIANA MLFAHVLTTE RIPHIIAEAI VGLGLPAWGF LIIVNILLLA
AGNFMEPSAI LLIMAPILFP IATQLGIDPI HLGIIMVVNM EIGMLTPPVG LNLFVTAGIT
GKSMGWVIKS CIPWLGLLLI FLILITYVPQ ISLFFPEYID KLNGY
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