| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1606 |
|---|
| Symbol | |
|---|
| ID | 6115847 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 1996462 |
|---|
| End bp | 1998375 |
|---|
| Gene Length | 1914 bp |
|---|
| Protein Length | 637 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641633089 |
|---|
| Product | flagellar hook-associated protein FlgK |
|---|
| Protein accession | YP_001759987 |
|---|
| Protein GI | 170725961 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG1256] Flagellar hook-associated protein |
|---|
| TIGRFAM ID | [TIGR02492] flagellar hook-associated protein FlgK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0566107 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTATGG ATCTTCTTAA TATTGCAAGA ACAGGTGTTT TGGCCTCTCA GTCACAACTG
GCGGTTACTA GTAATAATAT TGCCAATGCC AATACTCAAG GCTACCACAG ACAGGTCGCT
GAGCAATCGA GTTTGGATAA CCAGCGTCTG GGCGGTAACT TTTTCGGTTC TGGTACTTAT
ATCTCAGATG TAAAGCGTAT CTATAATGAT TACGCGGCAA GAGAGCTCCG GATTGGTCAA
ACGACTGTCA GTGAGGCGCA GGCTACTCAG ATTAAGATGG GTGAACTGGA TCAGCTGTTT
TCTCAAATTG GTAAATCCAT TCCTCAGGGA CTGAACGATC TTTTTGCTGG ATTGAACAGC
TTAGCCGATC TACCCGACGA TATCGGAATT AGAAATAATG TATTAGGTTC TGCAGGACAT
CTAGCCAGTA GCTTGAATCA GATGCAAGCA CACCTAGATG GGCAGATGAA GCAGACCAAT
GATCAAATCG CTGGTATTAC CGACAGAATT AATGAGATTG GTAATGAGTT AGGCCATATT
AACCGTGAAC TGATGAAGTC GCAGGGCGAA GATATGTCGT TACTGGATAA GCAAGATGCG
CTTATTCAGG AGCTTAGCCA GTATTCTCAA GTTAATGTGA TCCCATTAGA TACAGGGGCA
AAAAGCATCA TGTTAGGTGG TGCAGTGATG TTGGTGTCAG GCGAAGTGTC TATGGCAATA
GGCACAACTG CTGGTGACCC ATTCCCGAAT GAATCGAGAG TGACTAGCTC TGCTGGGGCT
CAAACGTTGA TTATCGATCC GTCACAGATG GGAGGCCAAC TTGGTGCTCT ATATGAGTTT
CGCAATGAAA CCTTAGTTCA AGCTCAGTTG GAAGTTGGGC AGCTTGCATT GGGTGTTGCA
GATGCTTTTA ATCAGGCTCA ATCACAAGGC TTCGATCTCT CAGGTGCACT GGGACAGAAT
ATTTTTACTG ATATTAATGA TCCTGACATG GCAGTAGGCC GGGTTGGTGG GTTTGGTACT
AATACTGGTA ATGCTAATTT AAGAGTCAAC ATTGATGATA CTTCTGCCTT AACTGGTGGA
AGCTATGATT TAACCTTCAC AGCCCCCGGT ACTTATGAGC TAACGGACAT CAATACCGGA
GTGGTTACTC CTTTGACCTT AAATGGCTCT CAACTTGATG GTGGAGATGG CTTCTCTATT
CATATTGATT CTGGCGCATT TGTTGACGGT GACAAATTTG AGATCCGCCC ATCAGCTGGC
GCTGCAGCAG GTATTAAAGT TGAGATGACC GATCCCAAGG GAATTGCAGC AGCGGGGCCG
AAAATTACAG CGGGGACGGC TAATTCCGGT AATACCGAAA TTGAGATCCT TAGCATAGAT
AGAAACAATG TGAACCTACC TTTAACGGGA TCTGAACTGA CTTATCAGAT AGATCCTGTT
GCAAATACCT TCACTGTCTT TGATGCATCG GGAACGTTAG TGAGTGCCGC CGCTCCATAT
ACGCCGCCTA CCATTACCAG CAATGGTTTC AGTTTTGATG TGAATACGAC ATCTACATCG
ACAGAGAGTT TTACTTTCGA TTTTACCTTT GCTGAGGGCG ATAACAGTAA TGCTGTTTCG
ATGGCACAGC TTAGCGAAGC TAAGTTGATG AACAGTGGAG GCTCTACATT AACCGACGTC
TATGAAGGCA CTAAGTTAGT TGTTGGCGGT AAGGCCAAAG CTGCATCCGT TGCTGTTGGC
TCAGCCGAAG CGGTTTTCAC CCAAGCCTAT AACCGAGTTC AGAGTGAATC AGGGGTAAAC
CTAGATGAAG AAGCCGGTAA CTTAATTCGA TTTCAACAAG CCTATCAAGC GTCCGCAAGG
ATTATGACAA CGGCTTCAGA GATCTTTGAC ACCTTATTTA GTTCTGTTCG ATAG
|
|---|
| Protein sequence | MGMDLLNIAR TGVLASQSQL AVTSNNIANA NTQGYHRQVA EQSSLDNQRL GGNFFGSGTY
ISDVKRIYND YAARELRIGQ TTVSEAQATQ IKMGELDQLF SQIGKSIPQG LNDLFAGLNS
LADLPDDIGI RNNVLGSAGH LASSLNQMQA HLDGQMKQTN DQIAGITDRI NEIGNELGHI
NRELMKSQGE DMSLLDKQDA LIQELSQYSQ VNVIPLDTGA KSIMLGGAVM LVSGEVSMAI
GTTAGDPFPN ESRVTSSAGA QTLIIDPSQM GGQLGALYEF RNETLVQAQL EVGQLALGVA
DAFNQAQSQG FDLSGALGQN IFTDINDPDM AVGRVGGFGT NTGNANLRVN IDDTSALTGG
SYDLTFTAPG TYELTDINTG VVTPLTLNGS QLDGGDGFSI HIDSGAFVDG DKFEIRPSAG
AAAGIKVEMT DPKGIAAAGP KITAGTANSG NTEIEILSID RNNVNLPLTG SELTYQIDPV
ANTFTVFDAS GTLVSAAAPY TPPTITSNGF SFDVNTTSTS TESFTFDFTF AEGDNSNAVS
MAQLSEAKLM NSGGSTLTDV YEGTKLVVGG KAKAASVAVG SAEAVFTQAY NRVQSESGVN
LDEEAGNLIR FQQAYQASAR IMTTASEIFD TLFSSVR
|
|---|
| |