| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1562 |
|---|
| Symbol | |
|---|
| ID | 6115802 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 1944349 |
|---|
| End bp | 1944858 |
|---|
| Gene Length | 510 bp |
|---|
| Protein Length | 169 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641633044 |
|---|
| Product | CMP/dCMP deaminase zinc-binding |
|---|
| Protein accession | YP_001759943 |
|---|
| Protein GI | 170725917 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0590] Cytosine/adenosine deaminases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0968895 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCCCAAA CAGAACGCGA TATCCATTAT ATGAAGTTGG CGATGGATAT GGCCGCAAAA
GCAGAAGAGA AAGGCGAGGT GCCTGTTGGT GCCATTTTAG TAAAGAATGA CGAAGTGATA
AGTGCAGGGT TTAACTTCTG TATTGGATCA CACGACCCTT CCGCCCACGC AGAGATGCAA
TGTTTACGTC AGGCGGGGAA GGTGATAGAG AACTATCGGC TACTAGATAC CACCTTGTAT
GTGACATTAG AGCCTTGTGC TATGTGTGCT GGCGCTATGG TTCATTCCCG AGTATCACGT
TTAGTGTTTG GGGCTAGTGA TGCAAAAACA GGTGCTGCCG GCACTGTGAT TGATTTGGTG
CGACACTCTG CATTTAATCA TCAACTTGAG GTGACTCAGG GAGTGTTAGA GCTAGAATGC
GCCGAGCAGT TAAGCCAATT TTTCAGACGT CGTCGCAAAG AGAAGAAAGC CCTTAAGCAG
CAACAGAAGC TGAGTGCTAG CCCCGAGTGA
|
|---|
| Protein sequence | MSQTERDIHY MKLAMDMAAK AEEKGEVPVG AILVKNDEVI SAGFNFCIGS HDPSAHAEMQ
CLRQAGKVIE NYRLLDTTLY VTLEPCAMCA GAMVHSRVSR LVFGASDAKT GAAGTVIDLV
RHSAFNHQLE VTQGVLELEC AEQLSQFFRR RRKEKKALKQ QQKLSASPE
|
|---|
| |