| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1558 |
|---|
| Symbol | xseA |
|---|
| ID | 6115798 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 1937444 |
|---|
| End bp | 1938772 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641633040 |
|---|
| Product | exodeoxyribonuclease VII large subunit |
|---|
| Protein accession | YP_001759939 |
|---|
| Protein GI | 170725913 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1570] Exonuclease VII, large subunit |
|---|
| TIGRFAM ID | [TIGR00237] exodeoxyribonuclease VII, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0686099 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATGC CAAAAAATAA TGTTTATACC GTCTCACAGC TCAATGGTGA GGTGCGCCAG
CTTCTTGAGG GCGAGCTAGG GAGAGTCTGG CTTAACGCCG AAATATCGAA CTTCTCCTCT
CCCAGCTCCG GCCATTGGTA CCTAACACTT AAAGATCACT TCGCGCAAAT TCGCTGCGCC
ATGTTCAAGG GCAAAAACCG CACAGTCACT TTTAGACCAG CCAACGGTCA GCAGGTACTG
GTCAAAGGTT CAATCAGTGT CTATGAACCC AGAGGTGATT ATCAGCTCAT CATTGAGTCC
ATGCTACCAG CCGGTGACGG CATGCTAGCT CAGCAGTATG AAGCCTTAAA GATGAAGCTC
GCAGCCGAAG GACTTTTTGC TACCGACACT AAACGACCGC TCCCGACGAA TATCAATAAA
ATAGGGGTTA TCACTTCAGC AACAGGTGCA GCGCTTAAAG ATGTGCTTCA TGTGTTAGCA
AGGCGCGACC CCTCCATTGA AGTGGTGGTT TATCCCACTC AAGTTCAGGG TGATAACGCG
GCCAAACTTA TCTGCCGCGC GATCGAGCTT GCCAATGCCA GACAGGAGGT CGATGTGTTA
CTGCTTACCC GTGGTGGTGG CTCTCTAGAA GATTTATGGT GCTTTAACAG CGAAGACTTA
GCCCATTGCA TCTACAACAG TGCCCTGCCT GTCGTCTCTG CCGTTGGCCA TGAAGTGGAT
ACCAGCATCA GTGACTATGT CGCCGATGTC AGGGCTCCCA CACCATCAGC TGGTGCGGAG
CTGCTCTCTA AAGATGCTGA TGATAAAGCC CACAAGTTAA TAGCTGGCCT CTCTCGCTTA
AAGCAAAGCT GGCAACATTA CCAACTTAAA ACGGTTCAGA AAGCGACAGC TCTTGAAAAT
CGCCTGCAGC GACAAGATCC CAAACGCCGA CTTGAGCAGT TTGAGCAGAG CTTCGATGAG
ATGCAGTTAC GCCTTAACGC CGCCCTCAAT AGCAGAATTC ATAAACTGGC ACTAAAGCAG
CAAAACTTAA GTCACAGGCT CAGCCAGCAA TCCCCTGAGC ACAGACTAAC CCTAGAAGCT
AAGCGTCTAG ATTACCTAAC CACACGCTTA AACGAGGGGA TTAAGGACAA GCTACATGAT
GTAGAGCTAA GCCTTAAAAA CAGTGCCCAT CAACTACAAA CAGTCAGCCC CTTAGCCACA
CTTAGTCGCG GCTACAGTAT TACCCAAGAT GAGTCAGGCA AAGTGCTCCT CAATGCAAAA
GATGCAAAAA CAGGCGACTT GCTGACCACA AGACTACTTG AGGGGGAACT GCGCTCTAAA
GTGGTTTAG
|
|---|
| Protein sequence | MKMPKNNVYT VSQLNGEVRQ LLEGELGRVW LNAEISNFSS PSSGHWYLTL KDHFAQIRCA
MFKGKNRTVT FRPANGQQVL VKGSISVYEP RGDYQLIIES MLPAGDGMLA QQYEALKMKL
AAEGLFATDT KRPLPTNINK IGVITSATGA ALKDVLHVLA RRDPSIEVVV YPTQVQGDNA
AKLICRAIEL ANARQEVDVL LLTRGGGSLE DLWCFNSEDL AHCIYNSALP VVSAVGHEVD
TSISDYVADV RAPTPSAGAE LLSKDADDKA HKLIAGLSRL KQSWQHYQLK TVQKATALEN
RLQRQDPKRR LEQFEQSFDE MQLRLNAALN SRIHKLALKQ QNLSHRLSQQ SPEHRLTLEA
KRLDYLTTRL NEGIKDKLHD VELSLKNSAH QLQTVSPLAT LSRGYSITQD ESGKVLLNAK
DAKTGDLLTT RLLEGELRSK VV
|
|---|
| |