Gene Swoo_1547 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1547 
Symbol 
ID6115787 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1925360 
End bp1926547 
Gene Length1188 bp 
Protein Length395 aa 
Translation table11 
GC content47% 
IMG OID641633031 
Productouter membrane protein assembly complex subunit YfgL 
Protein accessionYP_001759930 
Protein GI170725904 
COG category[S] Function unknown 
COG ID[COG1520] FOG: WD40-like repeat 
TIGRFAM ID[TIGR03300] outer membrane assembly lipoprotein YfgL 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00611389 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGTCTT GGTGCAAAAC ATTGCTCGCA TGTGGATTGA GCTTAGGTCT GTTATCAGCC 
TGTTCATCCA GTGACGTAGA AGAGGAGCCG GTGAGCCCTT TGCCTGAAAT CGAGGCAAGT
GTCTTTCCAA CAGTAAGCTG GAGTGCTTCG GTTGGTAATG GTGTGGGACC TTATTACTCC
CGCCTACGCC CAGCTGCACG ATATGACAAA CTGTATGTTG CCGATCGTTA CGGTCAGGTG
GTTGCATTTG ATGAAGCCAC TGGTGAAAGA GCGTGGGAGA GAGACTTCAG CTCAGCTTTT
AAAGATAATA TCTTAGCCAA AAATAAAGGG GCTAAACTTG CAGCTGGCGT TACCGCTGCT
CGCGACAAGG TCTTTATCGG TGGCGAAAGT GGTCTACTTG GTGCACTCGA TGCTGAAACC
GGTGAAACCG AATGGTCGGT TGTTACTGGT GGTGAGCTAT TATCTGCGCC AACTGTTGCC
GAAGATATTG TTGTGGTCAA TACCAGTGCT GGAACGCTCG AGGCATACAG CGTTGAAGAT
GGTGAGCAGC AGTGGATCTA TGAGTCAAAG CTGCCAACAT TAACCTTACG CGGTACAGGT
TCTGCAAACT ATGAAGCGGG TGGTTTCTTT GTGGGAACTG CCGATGGTAA AATAGCCGTT
GTGATTAAGA ACAATGGTCA GGCTGCATGG GAGCAAGCGA TTTATACGCC AAAAGGCGGT
AATGAGTTTA CCCGTATGGC CGATGTCGAT ATGATGCCGC TCATTATTGG TGAAAACCTA
TACGCAGTGA GTTTTAACGG TAATCTCGTA TCGATGGAGC TAAGATCTGG TCGTGTTGTC
TGGACCCGTA AATATTCAAG TTTCCATGAG TTAGCCGATT CGGGTGTTAA CCTGTTTTTG
GTTGACGATC ATAGTCGCAT CTACGCAGTA GATAGACGTA ATGGTCTGGA GAACTGGAGC
AATACTGAGC TGGCAAATCG TGACTTAACG TCTGCAGCCG TGTTCAAAGA CTACATCGTA
GTGGGTGATT TTGAAGGGTA CCTTCACTTT ATCGACAAGA GTAATGGTAA TATTGTTGGC
CGTGTAGAGG TCGACAGTTC AGGCTTATTT AGCCAACCTC TGGTTGTAGG TGATAACATA
TACGTTCAAA CACGAAATGG TAAAGTTGCT AGAATAACGC TCCCATAA
 
Protein sequence
MKSWCKTLLA CGLSLGLLSA CSSSDVEEEP VSPLPEIEAS VFPTVSWSAS VGNGVGPYYS 
RLRPAARYDK LYVADRYGQV VAFDEATGER AWERDFSSAF KDNILAKNKG AKLAAGVTAA
RDKVFIGGES GLLGALDAET GETEWSVVTG GELLSAPTVA EDIVVVNTSA GTLEAYSVED
GEQQWIYESK LPTLTLRGTG SANYEAGGFF VGTADGKIAV VIKNNGQAAW EQAIYTPKGG
NEFTRMADVD MMPLIIGENL YAVSFNGNLV SMELRSGRVV WTRKYSSFHE LADSGVNLFL
VDDHSRIYAV DRRNGLENWS NTELANRDLT SAAVFKDYIV VGDFEGYLHF IDKSNGNIVG
RVEVDSSGLF SQPLVVGDNI YVQTRNGKVA RITLP