| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1544 |
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| Symbol | ispG |
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| ID | 6115784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1922152 |
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| End bp | 1923267 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641633028 |
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| Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
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| Protein accession | YP_001759927 |
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| Protein GI | 170725901 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.016056 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACAACG AAAACCCGAT TAAAAGACGT GCTTCAACCC GTATCTATGT AGGTGACGTT
CCTATTGGTG ATGGTGCACC AATTGCAGTC CAATCGATGA CCAACACCTT AACGACTGAT
GTTGATGCCA CTGTTGCTCA AATTCGTGCA TTGGAAAACG TAGGTGCGGA TATTGTACGT
GTCTCTGTGC CGACTATGGA TGCCGCTGAA GCGTTTAAAC TGATTAAGCA GCAGACCAAT
ATTCCTCTGA TCGCCGATAT TCATTTCGAT TACCGTATTG CACTTAAAGT GGCTGAATAT
GGCGTAGACT GCCTGCGAAT TAACCCAGGT AACATTGGCA ATGAGTCTCG CATTAAAAGT
GTGGTTGAGT GTGCCCGTGA TAAGAATATC CCTATTCGAA TAGGTATTAA CGGTGGCTCT
TTAGAAAAAG ATCTGATGGA CAAGTACAAA GAGCCTACGC CAGAGGCGCT GCTTGAATCT
GCGATGCGTC ATGTGGATAT CCTAGATAGA CTCAATTTTG ATCAGTTTAA AGTGAGCGTT
AAAGCATCTG ATGTATTCCT TGCCGTTGAA GCGTATCGTT TGCTAGCAAA ACAGATAGTG
CAGCCACTTC ATTTAGGCAT AACCGAAGCA GGTGGTTTAC GTTCAGGCTC TGTTAAATCT
TCCGTAGGAC TTGGGATGCT GCTGGCCGAA GGCATTGGTG ATACCTTGCG TATTTCATTG
GCCGCAGACC CAGTTGAAGA GATTAAAGTG GGCTTTGATA TTCTTAAATC GCTGCGGATC
CGTTCTCGCG GGATTAACTT TATCGCCTGT CCATCGTGTT CTCGCCAAGA GTTTGATGTT
ATCAATACGG TTAATGAGCT TGAGCGCCGT CTCGAAGATG TGATCACACC TATGGATGTC
TCTATCATCG GTTGCGTCGT TAATGGCCCT GGTGAAGCCT TGGTTTCAGA TATTGGCTTG
ACTGGAGGCA ATCGTAAGAG CGGTTACTTT GATGATGGCG TTAGACAAAA AGAGCGTTTC
GATAACGATA ATATCGTCGA TTCTCTTGAA GCTAAAATAA GGGCGAAAGC CTCAATCATC
AATGGACGTA TTCCGGTACA AGATCTAAAT AAGTAA
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| Protein sequence | MYNENPIKRR ASTRIYVGDV PIGDGAPIAV QSMTNTLTTD VDATVAQIRA LENVGADIVR
VSVPTMDAAE AFKLIKQQTN IPLIADIHFD YRIALKVAEY GVDCLRINPG NIGNESRIKS
VVECARDKNI PIRIGINGGS LEKDLMDKYK EPTPEALLES AMRHVDILDR LNFDQFKVSV
KASDVFLAVE AYRLLAKQIV QPLHLGITEA GGLRSGSVKS SVGLGMLLAE GIGDTLRISL
AADPVEEIKV GFDILKSLRI RSRGINFIAC PSCSRQEFDV INTVNELERR LEDVITPMDV
SIIGCVVNGP GEALVSDIGL TGGNRKSGYF DDGVRQKERF DNDNIVDSLE AKIRAKASII
NGRIPVQDLN K
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