Gene Swoo_1532 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1532 
Symbol 
ID6115772 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1909551 
End bp1911296 
Gene Length1746 bp 
Protein Length581 aa 
Translation table11 
GC content41% 
IMG OID641633016 
Productdiguanylate cyclase 
Protein accessionYP_001759915 
Protein GI170725889 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.131912 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACTAA AAAAGCCCTT AAGCAGCTTA AAAGAAAAGT TAAGATTACT TATATATATC 
ATCATTATAC TTACGTTAAC GATTGGGCTT ACGTCGATTG GTTTATCTCA GGAACTGCAG
CGTAAGCTAG ACCACTTAAT CAATCAAGAC GTGAGTAAAA TAATGTACGC GCTTAAGCTG
TCTAACAACA GTCAGGAGTT ACAGCTCACC ACTGTCAGGC TTTCATCATT TAGCACAAAC
AGTGAGCGCA CAGAACTACT CAATGTGCTA GTGGAGCAGT GGAGTGGATT AGAGAGAGGC
TTGCTCTCAC TTATTGAACT TGAAACTGAC CAAGCACAGC TTGCGAAGCT CAACGCTCAT
TTAAGCACAA TACAGTTAGC GGCTAAGCAG ATCCCACTTT TAGCTCAACT CACTGAGAAT
GCACAAGAAG CTGAGACACA AGCCAGCCGA CTTAAACTTA ATATGGGACT CATCGAGAAA
GGCTTTTCAC GAGCAGTTTC AAATGAACTC ACTAAATTAG ATCAAAAGGC CGACGGGTAT
TTAAGCCAAA AAAACTATCC CCAACTTCAA AAATCGATTG ATGAACATAG AGAGCTCACC
GACTTTTTAC ACTTAGGCAT GCAGGTATTC AGACTCGCAG CTGAGGTAGA TGATAATGCT
GATAATAAAA CGAACAATCA GTTGCAACGA GAGGCTATGC GACACTTTTT AGCATTAAAA
CAGCACCCTA GTTCATCTAA GATTGCTGCT CAATTAAAAG AGGACTGGTT ATCACAGATA
CACCCTAATC TAATCGGCTC CTCAAACTTA TTTATTTCAA GCCGAGATTC AGTAAATAGT
GGTCGAATAG CGAACACTCA CCTTGAGATA CAAGCCGATG CAGCCCATCA GATCGCACTC
TTCTCCTCAA AACTGGTAGA GCAAGTAAAG AAGCAGGTCG ACATTGAAGG ACAACATCTA
AAAGATGATA GTAACTCCTT TGTATGGCTT ATCTTCTTTG CCGGAGTGCT ATATACATTT
TTCATCTGGT TAACCAACTG GCACTTTATC TCTAAAGGGA TAATACAACC CGTTATCGCT
ACCAGCAATG CGATGCAAGC TATCGCCAAT GAGAAACAGA ACACTCCGCT GCCTCAGGCC
GATAACTTAG AACTTCAGCA GATGGTGAGC TCATTAGAAA CATTGAAAAG CTATGCAGCC
CAGGTCAAAT CTATCTCTGA AATTGATGGA TTAACTGGCG CATATAACCG TAGGTTTTTC
GATCACAAGC TAAAGCATGA ATTAAAATCA ACGAGTAAGT TTAACCAACC AATCTCTATC
ATATTGTTCG ATGTCGATAA CTTTAAACTG TTTAATGATA GGTATGGTCA TGTTATCGGA
GATCAATGCC TTAAGCGTAT CTCCTATGCG TTAAAAACCT TACCTGAGAT GCAAGATAGA
ATATTTGCCC GTTACGGTGG CGAGGAGTTT ATTGTTTTCT TAACCGCAAC TGATAATCAA
ACTGCCAGTG ACATCGCAGA GATAATGCGA GAGGAGGTCA TCAAGCTCGC CATTCCCCAT
GCAGACTCCC TGCATAATGA GCTCACTACT ATCAGTATAG GCGTCACCAC CTCAAACTCT
GAGCCAGGTA TCACTGCCGA AACCTTAATT CATCAAGCGG ATATTGCACT TTACCAAGCA
AAGGCATCGG GCAGAAACTG TATTGTCTCT AATCTTGAGT TTAAAGCGGT AAACAATTTA
CGCTAA
 
Protein sequence
MKLKKPLSSL KEKLRLLIYI IIILTLTIGL TSIGLSQELQ RKLDHLINQD VSKIMYALKL 
SNNSQELQLT TVRLSSFSTN SERTELLNVL VEQWSGLERG LLSLIELETD QAQLAKLNAH
LSTIQLAAKQ IPLLAQLTEN AQEAETQASR LKLNMGLIEK GFSRAVSNEL TKLDQKADGY
LSQKNYPQLQ KSIDEHRELT DFLHLGMQVF RLAAEVDDNA DNKTNNQLQR EAMRHFLALK
QHPSSSKIAA QLKEDWLSQI HPNLIGSSNL FISSRDSVNS GRIANTHLEI QADAAHQIAL
FSSKLVEQVK KQVDIEGQHL KDDSNSFVWL IFFAGVLYTF FIWLTNWHFI SKGIIQPVIA
TSNAMQAIAN EKQNTPLPQA DNLELQQMVS SLETLKSYAA QVKSISEIDG LTGAYNRRFF
DHKLKHELKS TSKFNQPISI ILFDVDNFKL FNDRYGHVIG DQCLKRISYA LKTLPEMQDR
IFARYGGEEF IVFLTATDNQ TASDIAEIMR EEVIKLAIPH ADSLHNELTT ISIGVTTSNS
EPGITAETLI HQADIALYQA KASGRNCIVS NLEFKAVNNL R