Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1512 |
Symbol | |
ID | 6115751 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 1885177 |
End bp | 1889619 |
Gene Length | 4443 bp |
Protein Length | 1480 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 641632996 |
Product | multi-sensor hybrid histidine kinase |
Protein accession | YP_001759895 |
Protein GI | 170725869 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.0878697 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGAGA TCTCGGCCAA GCAAGTTAAT CTCAGTAAAA AAAAATATCA CTCACTCAGT TTGAGTTTTA CCTTGTGGTT CCTCGCGCTT TCGCTTATTC CGCTGATTGG TGTCTCTTGG TTTAGTTATG AGCAAGCTAA ACAGAGTTTG ATGAACGCAG CAGAAGATGA GTTAACTCAA TCATCGAGTT TTACGACTCA GGCTATTCAA AGTTGGTTTA ATTTACGCCT GCAGGATTTA AAAGTGGAAG CAGAATCGAC ACAGATGTCA GCAATGCTGC AGTCTTTGAG CTCTGGAGTA GTCTTGAGTG AGCAACCACT TGCTCACTAT GTCAAGAGCA GTGATTGGCA AGGGAGGGTG GATAGGTACC AAGAGCATCT TGTCACTTTA GTTGAACAGT ATGACTATAT TAATGATATC TATCTTATCG ATACTGATGG AAACATACTC TATTCCGTTG AAAAGAATGC TGATCTTGGT GAAAATATTT TTAGTCCTGC ACTTAGATAT AGCCATTTCT CAGCCAGTGC TCAGGACTCG CTAAACACGG GAGAAGTGAG CTTTTCCAGT ATTGAGCATT ATCAGATCTC AGACAACCCC ATCTCAAGTT TCATCACCTT ATCCATGTTT AATGAGTTTG GAAAAACTGT TGGTATATTT GCAATTCAAC TGCAGTTTGA ACGCATTCTG AAATCTTTGA ACTTATCGGT AAAGGAGGGC AGTTCGTTAA CTCATTACCT TGTTGATGAA AATGGTTTGC TGCTTTCACC TATTCGAGAT AACTGGAATG AGGTCACCAT CAAGTCAATT GATACGGCGC AGTTCAAAGC TTGGTTAGCA AATAGAGCTG AAAAATCATC AGCTGTTGTT TCTGAGTCAG ATGAGAAATT TAACATCAAC CTGTCTGCAT TTGAGTACAT GGGGCCTGAT AATAAATTGG TGATAGGGTT ACACCAGGTG GTGAAGCTAG CCAATGTTGA TTGGCTACTG GTCAGCGAAG TGGATAGAGA TGAGGCATTA GGAGAGATTA GCTGGCTTGC AAAAATGACC TTACTAATGC TCTTATTAAC AACCTTTGTT GTTGTGTTAT CAGCTATTTT TGTTGCTAGA AAGATAACTG AGCCCATTAA GCAGTTAGCT AGAACTAGCC TTGATGTTGC TAAAGGTGGA CGTGTTAAGC CTATTCATAT TGATAATAAT AATGAGATCT CTCATTTGGT TGATGCATTC AACGAGATGT TACTGACAAA AAGCTCCTAT GAGGACTCAC TCTTTTTGGC TAACTCTCAA GCCCAAGCAG CATTAAATAA TCTAGAAGAT CAAAAATTTG CTTTAGACCA GCATGCAATT GTTGCAGTGA CAGATCTGAA AGGAAATATT ACCTATATTA ATCGTCGCTT CTCTGAGATA AGCGGTTACC AAGAGGAGGA GTTGATCGGA AAAAATCATC GCCTGCTGAA CTCTGGGCGT CATCCAAGAT CGTTTTTTAT CCAGATGTAC AGTGTGATCT CTAAAGGAGA GGTTTGGAAT GCAGAGATCT GTAATCGGGC TAAGGATGGG AGTTACTATT GGGTAGATAC CACCATAGTG CCATTTACCA ATGCTGAAGG TAAACCTGAA AGCTATATCG CTATTCGCAC CGATATTACC ACCAGAAAGC TTGCAGAGAT AAAAACAAAA GAAGCCCTCT CTTTAATGCA CTCCATGCTT GAATCAACTG ATAACGGTAT TTTAGTGACA AGTTTGGACG GTAAAATTTT ACAGTTTAAT GAAAGCTATG CTGCACTATG GGATATCGAA GTGAAAACGG GGTTGGATCA TAGAGAGTTT GAGCTTAAAA ATAGGGACAA AATTTTAGAC TATCAAGGGG TTATTGAGAG GATTGCAAGC CTTTATAGTG AACCCGACTT TGAAGGTTTC GATATCTTAG AACTAACTGA TGGCAGAATA TATGAGCGTG TTTCTTTGCC TATGAAATCT GATGAGGGGC TGTTGGGGAG GGTTTGGAGT TTCCATGATA TCAGTAAGCG AATGAAAACC CAGAATGAGC TCATTTTGGC TAAAGAGGAG GCAGATCTTG CTGTTAAAGC AAAGAGTGAA TTTTTAGCCA GTATGAGTCA TGAAATTCGC ACTCCCATGA ATGGTGTATT GGGGATGCTA GGCTTACTCA ATAATACCCA GTTAACAGAC TACCAAAAGC GTAGGGTCAG TATTGCTCAG TCCAGTGCAA AATCTCTTTT GACTTTAATC AACGATATTC TTGATTATTC GAAAATTGAT GCTGGTAAAT TAGAGTTGGA AAATTTGGAC TTTAACTTGC GAGGAATGCT TGGTGAGTTT GCTGAAGGGA TGGCCTTTCA GGCACAGAAT AAGAGTCTGG AGTTGGTATT AGACCTTAAA GGGATAGAAC ACTCTATGGT GACGGGGGAT CCTAGCCGGC TTCGTCAAGC ACTGACAAAT CTCGTGGGCA ATGCGATAAA ATTCACCAGT AAAGGTGAGG TGCTGATTGA AGCTGGACTT CGTGATAGCG GTGACGAATG GTGTTTTTGG TGTGTGATTA CAGACACTGG AATAGGGATT GCTGCTGATA AGATCTCATC TCTTTTTGAC TCCTTTAGTC AGGTTGATGC ATCGACTACC CGTAAATATG GTGGTACAGG TTTAGGTTTA GCCATTGTGC AAAAAATCTG TCAGTTAATG GGAGGAGATG TCAGCATAAC CAGTGAAGTC GGCAAAGGGA CACGTGTTGA GTTTACTATT TACTTAGGTA AAAGTATTAA CTCTCAATTG GTTGTTCCTA GTGCGAATAT TGAAGAGTTG AACTTACTCG TTGTTGACGA TAATGAAACC AACAGAGACG TTATTATCGA GCAGCTATTG ATTTGGGGGG CAAATGTTGA AGGTGCATCT AATGCAGTTA AAGCGTTAGA GCTTTGTGCT TATAGAGATG AAAACCTTGA GCAATCCCAG TTTGATGTCG CATTTCTAGA TATGCAGATG GCAGATATTG ATGGGGCTGA GTTGGGGCGG CGGTTAAAAT TTGATGACAG ATTCAAATCA ATAAAACTAG TGATGATGAC CTCAATGTCT CAAATCGGTG ATGCGAAATT TTTTGCCGAT CTCGGTTTTA GTGCTTATTT TCCTAAGCCC ACAACCACCT CTGATCTTTT TGATGCACTC TCAGTTATCT CCGAAGATGG TGAGGCTTTA CTCAAGGCGC ACCCGTTGAT CACACATCAC TATCTGCAGA CATTAGTCCA TAACGATGAT ACCGGGCCTC AGGAGTTTTC CTCAAAAGTA CGAATCTTAC TGGTAGAAGA TAATTATGTT AACCAGCTTG TTGCAACAGG GGTTTTAGAA GATTTTAAGG TGTCAGTAGA TGTTGCAGAC AATGGAGTTC AAGCTATTCA TATGCTGCTT AATGCAGAGG ATCCTCCATA CTCTTTAGTT CTGATGGATT GCCAAATGCC AGAAATGGAT GGCTATGAAG CGTCGAGAGC AATACGCAGG GGAGAAGCGG GTGACAGGTA TAAACAGATC CCCATTATTG CGATGACGGC GAATGCCATG ATGGGAGATA AAGAGAAATG CCTCGATTCG GGTATGGATG ACTATTTGGC AAAGCCGATA GAGCCAGAGA AGATCTACTT TAAATTAAAC CAATGGCTTA ACACTACAGG TGAACACAAT AGCCCAGCCT TAGAGGCGAA AACCACTTCA AGCTCCCGTG GAGCTGGGCA TCTGAGAACC CCAGCTAAGA AAGAGTCAAA TACTGCTCAT GATACTCAAT CGGCTTCTAT AATTGATAAT AAGATGACAG AAAGAAATAG ATTATGGGAC AGGGATGGAC TGATGAAGCG TGCTATGGGC AAGGAGGCGC TTTTTAACTC GATACTTCAT CTGTTTAATG AAGATATGCC TTCTAGAATG GAGGCGCTTA ATCATGCCAT TAAGGCTGAA GATTTAGATG CGATAAGACA GGTTTCGCAT ACTGTGAAAG GTGTTGCCGC TAATGTTGGA GGGGAGCTTC TTAAAGAGCA AGCCGCGATT ATTGAATTTG CCGCAAAAGA GGGGGATCTA ACTAAGGCAA AAACTGAGCA TCCAGCGCTT GTGGTTGCGT ACCAAGAGTT AAAGCTGGTG ATCGATGAAT TTCAGCAAAA GCCTGAAACA GAGGTCATTA AAAAAGAGTT GTTATCTCAG GAGCGGGTTA ATGGGCTCTT AGATCAGCTT GATAAACTGT TGGCGCAAGG GAGTTATATC AATATTGAGG AGTTCATAGG GCTTGAGAGT GCGAGTATCG ATAAAATTTT ACAGTCTGAA TTTGATCACC TTCTATTACT GCTAACTGAT TATGATTACC CTGCCGCAAT TACCGCCCTT AAAGAGTTAA AAGTTCGATT GGCTAAAATC GAACTCAGCA GAGGGGAGGC CTCTCGTTCA TGA
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Protein sequence | MDEISAKQVN LSKKKYHSLS LSFTLWFLAL SLIPLIGVSW FSYEQAKQSL MNAAEDELTQ SSSFTTQAIQ SWFNLRLQDL KVEAESTQMS AMLQSLSSGV VLSEQPLAHY VKSSDWQGRV DRYQEHLVTL VEQYDYINDI YLIDTDGNIL YSVEKNADLG ENIFSPALRY SHFSASAQDS LNTGEVSFSS IEHYQISDNP ISSFITLSMF NEFGKTVGIF AIQLQFERIL KSLNLSVKEG SSLTHYLVDE NGLLLSPIRD NWNEVTIKSI DTAQFKAWLA NRAEKSSAVV SESDEKFNIN LSAFEYMGPD NKLVIGLHQV VKLANVDWLL VSEVDRDEAL GEISWLAKMT LLMLLLTTFV VVLSAIFVAR KITEPIKQLA RTSLDVAKGG RVKPIHIDNN NEISHLVDAF NEMLLTKSSY EDSLFLANSQ AQAALNNLED QKFALDQHAI VAVTDLKGNI TYINRRFSEI SGYQEEELIG KNHRLLNSGR HPRSFFIQMY SVISKGEVWN AEICNRAKDG SYYWVDTTIV PFTNAEGKPE SYIAIRTDIT TRKLAEIKTK EALSLMHSML ESTDNGILVT SLDGKILQFN ESYAALWDIE VKTGLDHREF ELKNRDKILD YQGVIERIAS LYSEPDFEGF DILELTDGRI YERVSLPMKS DEGLLGRVWS FHDISKRMKT QNELILAKEE ADLAVKAKSE FLASMSHEIR TPMNGVLGML GLLNNTQLTD YQKRRVSIAQ SSAKSLLTLI NDILDYSKID AGKLELENLD FNLRGMLGEF AEGMAFQAQN KSLELVLDLK GIEHSMVTGD PSRLRQALTN LVGNAIKFTS KGEVLIEAGL RDSGDEWCFW CVITDTGIGI AADKISSLFD SFSQVDASTT RKYGGTGLGL AIVQKICQLM GGDVSITSEV GKGTRVEFTI YLGKSINSQL VVPSANIEEL NLLVVDDNET NRDVIIEQLL IWGANVEGAS NAVKALELCA YRDENLEQSQ FDVAFLDMQM ADIDGAELGR RLKFDDRFKS IKLVMMTSMS QIGDAKFFAD LGFSAYFPKP TTTSDLFDAL SVISEDGEAL LKAHPLITHH YLQTLVHNDD TGPQEFSSKV RILLVEDNYV NQLVATGVLE DFKVSVDVAD NGVQAIHMLL NAEDPPYSLV LMDCQMPEMD GYEASRAIRR GEAGDRYKQI PIIAMTANAM MGDKEKCLDS GMDDYLAKPI EPEKIYFKLN QWLNTTGEHN SPALEAKTTS SSRGAGHLRT PAKKESNTAH DTQSASIIDN KMTERNRLWD RDGLMKRAMG KEALFNSILH LFNEDMPSRM EALNHAIKAE DLDAIRQVSH TVKGVAANVG GELLKEQAAI IEFAAKEGDL TKAKTEHPAL VVAYQELKLV IDEFQQKPET EVIKKELLSQ ERVNGLLDQL DKLLAQGSYI NIEEFIGLES ASIDKILQSE FDHLLLLLTD YDYPAAITAL KELKVRLAKI ELSRGEASRS
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