Gene Swoo_1507 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1507 
Symbol 
ID6115746 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1878626 
End bp1880203 
Gene Length1578 bp 
Protein Length525 aa 
Translation table11 
GC content42% 
IMG OID641632991 
ProductPepSY-associated TM helix domain-containing protein 
Protein accessionYP_001759890 
Protein GI170725864 
COG category[S] Function unknown 
COG ID[COG3182] Uncharacterized iron-regulated membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.174501 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.519514 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAAAC AATTTTTAAA ACGAATTACC GAAGCGCACA GTTGGTTGGG ATTAATTATC 
TCTGGTTTGC TGTTTATTGT TTTTTTTACG GGCTCGATAA GCTTGTTTCG TAATGAGATA
GCGTTTTGGT CAATATTGCC ACACCATGCT CCCGCACAAG GCGAGCCTCT TCCTCCTAGT
GAGATTATAC AGCTTGCGAT AAAAGATTAT CCTTTCAATG CAAAAGAGCA TTTAACCTTG
GTTTCTCCCA CCTTAGCGTT TCCTTTTTAT AGCGTTTACG TGGATATTGT GTTGCCGGAA
GGTGCAACAT CTGATATTGA TTATGTGTCA CTACTGATAG ACCCAGTATC TGGGAAGACA
GTGGCGAAAA TTGATGATTT TTATCTGGCA GAATTTCTCT ATCACCTGCA CTACAATCTC
AATATCCCCT ATGGTAGTTA TATTATTGGT TTTGTAACTC TGTTTTTCTG CTTCGCTTTG
GTCTCAGGTA TCTTTATTCA TGCACGTAAG CTTTTCAGGC AGTTTTTTCT CTACCGAACT
GGAGAGGGAA AGCACGATCA GTTACTGACG ATGCACAACC TGATAGGTGT TATGACTCTG
CCTTTTACCT TGATGTATGC GATCACTGGT CTCATTTTTA ACTTAGTGAT TATCTATCAA
GTCGCCTTTG CCCTAGTGTT GTATAAGGGA GATCAGGAGG CATTATTAAC GGATGCGGGC
TACACACAAC CTAAGCCTGA ATGGCAGGGA GAACCGCTCG ATAGTCAAGA TGAGATAGAT
AAATTACTTG CACAGCATGT TCAGGACTTT GGTCAAGATG CCGCAGCCAT TCGCCTCTAC
AACTATGGTG ATAAGAGTGC TCTTATTCAG ATCTATGGCA ATGTTTCTGG TGAGTTTGTA
GGCCCGGTTG AACAGGTTAT CGCGCTGGAT AATGGTGAGA TGATTTTTTC CAAAACTCCG
ACCTCTCCCA ATATGGTAAC GATAGGGCAA ACGGTGCTTG CGACACTGCA TTTTGGGGAT
TATGCCGGTA TTGATTTAAA GCTTATCTAC TTTCTATTAG GTATGGGAGT ATGTGTGCTG
ATCGTGAGTG GTAACCTGCT TTGGGTTGAG AAACGTATGC AGCAGCGACA CTTTTCAGTC
AAGCAGACCT CAGCGGTAAA CAGCATGACT TTAGGCACAA CCATGGGAGT GATTTTAGCC
ACTGCTGTGG CGTTTTTATT TGAGCGCCTA TTGCCTATCG ACTTGCTTGG TCGTGAGAAT
GTGATGATAG CTAGCTTTGT TATTACATTG GGACTCTACA TGGCGCTAGC GTGGTTTATC
TTAGATAAAA GTAGGCTGTT GTTTATCTCT TTGGTGAGCA CAGGTGCAGC ACTTTTACTG
GTACTGTTTA GCGATTTTGT TCTCTTTCAT CATCAGATTG TTAACCTGCT TAGTTTAGAC
ATATTTAGTG TGGTTGGTGT GCAAATAGGC TTAGCTTGTA CTGCTATCTT GTCTATCACA
GTGGCCTTTT CACTGTTTAA CAAGAAAGCA CCACCGCCGA TTCTTGCCGA AGCGAATAGT
GAACCTGAGT TGGCTTAA
 
Protein sequence
MNKQFLKRIT EAHSWLGLII SGLLFIVFFT GSISLFRNEI AFWSILPHHA PAQGEPLPPS 
EIIQLAIKDY PFNAKEHLTL VSPTLAFPFY SVYVDIVLPE GATSDIDYVS LLIDPVSGKT
VAKIDDFYLA EFLYHLHYNL NIPYGSYIIG FVTLFFCFAL VSGIFIHARK LFRQFFLYRT
GEGKHDQLLT MHNLIGVMTL PFTLMYAITG LIFNLVIIYQ VAFALVLYKG DQEALLTDAG
YTQPKPEWQG EPLDSQDEID KLLAQHVQDF GQDAAAIRLY NYGDKSALIQ IYGNVSGEFV
GPVEQVIALD NGEMIFSKTP TSPNMVTIGQ TVLATLHFGD YAGIDLKLIY FLLGMGVCVL
IVSGNLLWVE KRMQQRHFSV KQTSAVNSMT LGTTMGVILA TAVAFLFERL LPIDLLGREN
VMIASFVITL GLYMALAWFI LDKSRLLFIS LVSTGAALLL VLFSDFVLFH HQIVNLLSLD
IFSVVGVQIG LACTAILSIT VAFSLFNKKA PPPILAEANS EPELA