| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1481 |
|---|
| Symbol | |
|---|
| ID | 6115720 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 1854929 |
|---|
| End bp | 1858756 |
|---|
| Gene Length | 3828 bp |
|---|
| Protein Length | 1275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641632965 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001759864 |
|---|
| Protein GI | 170725838 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.172 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATT TAATGAAGAA CACTCCTGCG GTTAAAAAGC CTATTTGGCA AAGGTTTACC
GCCTATTTGA TGTCATTTAT CCTACTTGGG CAGATCTGTT TACCTGCGAC GGTAGTGGCT
GTTGAGCTGA TTTCTGATGT ATATATATCA TCAGAAGTCA ACTCTAATGC TCAGTTTGAA
AGGGTTTATA ATACTGACCG TCAGTTTGAA AAAGCATTTT ATGTCGAGGA TATCACAAGT
TCTGGTACAC AAACGGTAGA GTCGTTTCAT CAAAAACTGC TAGATTTTAG AAAGAGCTCA
CTACCTGCGC CATTAATGAT CCCAATAATG AATGGTGAGA TTACTATTAT CTTTCCTCAT
TATCGGTTAG AAAAACGGAT CGGTGATCAG TTTGTTCAAG CTCGATTTAT TCGCTCTCAG
ATCTTTAATC TACTCAATAG AAATCTACTT AGTGATGCTT ATGCTAATGA AGCTGCACAA
ATTAATGGGC TTTACAATAA AGCTTATGAG TTCAGTGCGA AATCTTCTGC CAAGTTTGGT
GATAGTTTAA CGCGTGCTCA GGTGAACACC TTTGGACATA ATTTTATCTG GCCTGAACTG
CGCACTGTGA ATGGTGAAGC GGTACTAGTA CCGATAGTTC ATCTAACTGA TGCGAGTGTG
GATGAGCTAC TTGTCGATGG CCATATTGTT GAATTTGCGG GTGAAACGGC GCAGTTTAAT
ACCATTACCG TTAATGCTGG TACTATTTAT ACCCGTCGAG GCACATTTCT TAATACAGCT
GGGGATTTCA CCGTTTCAGA AGGGGCAAGT GTTGTCGCTG ATGGTGACTT AAACTTGTTG
GTTGGTGGCA CCTTGCAAAA CCTTTCTGGC CGCCTATCAG CCGAAGATAA TGTCAATATT
ATTGCTAACC AATACCTTCA AAAAACGGTC GTACACCGTT ACGCCACGCG TTATGAACAG
GGTACTCGTC TAGGCGAGAT CGCCAGTGTC GATGCGGTCA ATGGCAATGT TTCAATTAGA
AGCTATAACG ATATTGTTGT TCAAGGTGGC ACCATATCGG GCAATAACGT CATCCTTAAT
GCCGATGGCA ATATTCAGCT AACGACTCAA TACACGACTT ATGTGCGTAA CCAAGCTGTC
GGTGGTTATG ATGAAACACA ATCGATTATT GAGCACACAG CAAGCGTGCT TAGCGCTAAA
GATAATATTT ATCTTATGGC TTCAGGCGCT ATTGAATTAA ATGCCGCTAC CTTGTTCGCT
GATGAAGGTG TGATTCAAAT ATTGGCCGAG CAGGGCGTTT ATATTGCTAA TGAGTTTAAT
GAATTTCAAT CATCACGTTC TGGCAAGGTT GGTAAGGTAA CCCTGCAGGA ACAAGAGTTT
CAAACCATTG CGATACGCTC TGCGTTAGAA GCGGGTAAAG GCGTGCTCAT TGCATCAAAC
TTCGGTGATA TCACGCTTCA GGCAACAGAG ATAATATCGG GTGCTGGCAC CCAAATTAAT
GCACTCAATG GCAAGGTCAA TTTGTTATTG GCGAAGGAGC AAGATCACTA CTTCTATAAT
CGTGTTAAGG AAGGTTTCTG GCGCATAAAA ACCGAAACTC AAACTGATAC TGTAGATACC
GCCGTTTACA ATAGCATTAT TGGTGGTATA AAAGTTCAAG CAACTCACGG TGTTACGCTT
GAGTTTGGTC AAGAGGAAGG TGTCACTCTG CAAGACTCTC TTGCCATGTT TGAGCAAACT
GAAGATCTTG CGTGGATGGC TGAAGCATAC AATGATCCTG AACTTGCAAG TAATATTGAG
TTAGTTTATC AAGAGCTCGT TAAAATCCAT GAGTACGATA AATCCAGCAG TTTAAGCCCA
GCAGCTATGG CAATTATTGC TATCGCGGTC GCTGTGGCAA TGGGGCCCGC AGGTGTAGGG
CTTATTGGTG CAAAAGGTGC CATCGGTGCG GTGGGCTTCG TCGCGCAACC TGTAATGCAA
GCAGGGGCAT TAGCCTTAGC AACGCAAACG GCGATGAGTT TTGCCAATGG TAATAACTTA
TCTGAAACCG TTAAATTAAT GCATTCAAGT GACACTATTA GAGCGGTTGC TACAGCGATG
ATCACCGCAG GAGCGTTGAG CGCCATAGAT GAAGTAAAGC TGTTTGATAT GCCAGCAGGA
GTAGATGCTT CTGCTGATCT AATTAGTGCG CAAACCGCGA TTGACCTAGG AAATCAAGCC
ACACTAATCG TTGTTGAAAC GACGGTGAGT ACCGGGATCT CGACCATTAT TAATGGTGGT
GATTTAGGTG ATTTTGGTGA GGCTCTGGTT CAAGGGTTAC AGCTATCTGC CATCAATAAG
ATTGGTCAAA AAGTTGCAAA TGAGATTGGA GGCTTGGCAG ATTCTAAGCC CCCGAAAATC
AATGAAGCAC TTAGGTATAT CTCGCATGCC GGTTTAGGGT GTGCACTTGG GGCCGCAACA
GCTGAAGTCA GTGGCAGTTC TGATCCTGTC GTTGGCTGTG GTTCAGGGGC TGGTGGTGCC
GTAATTGGTG AGGCCGTTGC ACAGGCATAC ACCGAAGCGA TGATGACTGA CAACCAAAAG
GAAGTCGTAG ATTGGTTAAA GTCTAAAGGC ATTATGGCAG AGGGAGATTT TGAGGCACTA
ACCCCTGCTC AACAAGCTGA ATATTATACA CTTGTTCAAT CAATGCAGGT GACGCCCAGT
GAACTACTTT CATTACAGGC AAAAGGCGTT GATTTAGCAA AGTTAGCGGG GGGCTTAGCT
GCATTTGCAG CAGGTGCCGA AGTGAATATT GCTGCACATA CAGCAGAAAA TGCTGCGCAG
CATAACTGGT TCCATTTAGT TGTACTAGCA GCTCGAGCAG CCATGTTTGT CATGAGTGCA
TTAGAGGTTT ATCAAGCAAC TCAAGACATC ATAGAGAAAT ATGAACAATT TAAAGCGCAT
GAGGGCAATG AAGAGCAGCA ACGTGCAATA TTGATACAGC TAGCAAAAAT GCTAGGTGAA
GAGCTCGTGT ACGAACTAAC TGTTGGTAAA TTAGAAAATG CTGCTACCGA CAAAGTATTG
GCTCGTATTA CAGAGTATGC CAAAGATAAA GGTTATGATA AAAAAATCAC TGATGTGCTC
AGTGATATGC ACCAAAGTGA AACCAATGGC ACCCCCTTTC CCCATAGTGA TAGAGTTAAT
GTTAGCCGTA ACCCTAACCT AGATAATTTG CCTCCTGGTT ACGAAGTCTT ACCCGATGGC
CGTATTCGTG GTACTGGTGG CGCTATTGCA AAAGATTCTG GCTATAAAAC AACTGAAGGT
GATGTTATCT TCCAGCGGGA AACGGGTAGC TATTATTATA TTAAGGGCGA TGGCACCCAG
CAATCTGTTG GCTCTCCCAG AGATACTGGT GACTATCTAA AGTATGATAA TGTATGGGCG
TCAGGAGTAC GCCCGGTAGA CCGAGGCCGG CAAATTCAAG CAGAACTCGC CAAAACGGAG
TACCAGCAAT GGGGCAACAC TGATTTCTAT GAAATTGTTG ACCCAGTTAC AGGTCAGTCT
AAAAAAGTGG TAGCGCAAAA CTTCCCGCTG ATTGACTTTG AGCTTGACGG CATGGTGGTG
AGCTTAAAAA CGGTCAATAC CAATGGTACA AGTTGGTTAA CAGATATGGA CTACCACATG
CGTGATTTAG CAAACAGAGG GATTTGGTCG GATGGTGTGC TGGTGCCCAC AAGCAATAGA
ATTTTAGATA TTCGGGTGCA ACCCGGTGGG TTAGCTGATA CCAGTAAATT AGGGGCCATG
GCCGCTAAGC ATGGTATTAC TATTGAAATT TCGGAGTATG GCAGTTAA
|
|---|
| Protein sequence | MKNLMKNTPA VKKPIWQRFT AYLMSFILLG QICLPATVVA VELISDVYIS SEVNSNAQFE
RVYNTDRQFE KAFYVEDITS SGTQTVESFH QKLLDFRKSS LPAPLMIPIM NGEITIIFPH
YRLEKRIGDQ FVQARFIRSQ IFNLLNRNLL SDAYANEAAQ INGLYNKAYE FSAKSSAKFG
DSLTRAQVNT FGHNFIWPEL RTVNGEAVLV PIVHLTDASV DELLVDGHIV EFAGETAQFN
TITVNAGTIY TRRGTFLNTA GDFTVSEGAS VVADGDLNLL VGGTLQNLSG RLSAEDNVNI
IANQYLQKTV VHRYATRYEQ GTRLGEIASV DAVNGNVSIR SYNDIVVQGG TISGNNVILN
ADGNIQLTTQ YTTYVRNQAV GGYDETQSII EHTASVLSAK DNIYLMASGA IELNAATLFA
DEGVIQILAE QGVYIANEFN EFQSSRSGKV GKVTLQEQEF QTIAIRSALE AGKGVLIASN
FGDITLQATE IISGAGTQIN ALNGKVNLLL AKEQDHYFYN RVKEGFWRIK TETQTDTVDT
AVYNSIIGGI KVQATHGVTL EFGQEEGVTL QDSLAMFEQT EDLAWMAEAY NDPELASNIE
LVYQELVKIH EYDKSSSLSP AAMAIIAIAV AVAMGPAGVG LIGAKGAIGA VGFVAQPVMQ
AGALALATQT AMSFANGNNL SETVKLMHSS DTIRAVATAM ITAGALSAID EVKLFDMPAG
VDASADLISA QTAIDLGNQA TLIVVETTVS TGISTIINGG DLGDFGEALV QGLQLSAINK
IGQKVANEIG GLADSKPPKI NEALRYISHA GLGCALGAAT AEVSGSSDPV VGCGSGAGGA
VIGEAVAQAY TEAMMTDNQK EVVDWLKSKG IMAEGDFEAL TPAQQAEYYT LVQSMQVTPS
ELLSLQAKGV DLAKLAGGLA AFAAGAEVNI AAHTAENAAQ HNWFHLVVLA ARAAMFVMSA
LEVYQATQDI IEKYEQFKAH EGNEEQQRAI LIQLAKMLGE ELVYELTVGK LENAATDKVL
ARITEYAKDK GYDKKITDVL SDMHQSETNG TPFPHSDRVN VSRNPNLDNL PPGYEVLPDG
RIRGTGGAIA KDSGYKTTEG DVIFQRETGS YYYIKGDGTQ QSVGSPRDTG DYLKYDNVWA
SGVRPVDRGR QIQAELAKTE YQQWGNTDFY EIVDPVTGQS KKVVAQNFPL IDFELDGMVV
SLKTVNTNGT SWLTDMDYHM RDLANRGIWS DGVLVPTSNR ILDIRVQPGG LADTSKLGAM
AAKHGITIEI SEYGS
|
|---|
| |