| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1420 |
|---|
| Symbol | |
|---|
| ID | 6115660 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 1782240 |
|---|
| End bp | 1783877 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641632908 |
|---|
| Product | PfaD family protein |
|---|
| Protein accession | YP_001759807 |
|---|
| Protein GI | 170725781 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2070] Dioxygenases related to 2-nitropropane dioxygenase |
|---|
| TIGRFAM ID | [TIGR02814] PfaD family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCTA CGACAACTAG TGAACAACTC TCTCCATGGC CGTGGGCTGT AGCAGATAGT
AAGATTAACT TTGATGTGAA TGTGATGGAG CAGCAGCTGA AAGACTTCAG TCGTGGCTGC
TTTGTCGTTA ACCACAGTGA AAAAGGGATT GGGATAGCTC AAGAAGCCCA TGTCGTCTCT
GAAGGTTCCT CTACGCAAGC AGCCAACGGT AACCAGCCGG TCAGTGCTTT TGCTCCTGCA
CTTGGTACCG AAAGTTTAGG TGACAGTAAC TTCCGCCGCG TCCACGGTGT TAAGTACGCT
TACTACGCAG GTGCAATGGC GAACGGTATC TCATCTGAAG AGCTGGTTAT TGCCCTAGGT
CAAGCAGGTA TTCTTTGCTC ATTTGGCGCA GCAGGCCTTA TCCCAAGCCG CGTTGAAGCA
GCCATAAATC GCATTCAAAA GGCGCTACCA AACGGGCCTT ACATGTTCAA CCTTATCCAT
AGCCCAAGTG AGCCAGCGCT AGAACGCGGT AGCGTCGAGC TATTTATTAA ACATAAGGTT
CGCACCGTTG AAGCATCCGC TTTCTTAGGA CTTACCCCCC AAATAGTCTA CTACCGAGCA
GCGGGCCTAA GCCGTGACGT ACAGGGTAAT GTGGTTGTCG GTAACAAGGT GATTGCTAAG
GTGAGCCGCA CCGAAGTGGC TGAAAAGTTC ATGATGCCAG CGCCAGTCAA GATGCTACAA
AAGCTTGTGG ATGATGGCTC TATCACAGCT GAGCAGATGG AACTTGCCCA GCTTGTGCCT
ATGGCCGACG ATATTACAGC CGAGGCAGAT TCAGGCGGCC ATACCGATAA CCGTCCTTTG
GTTACTCTAC TGCCCACTAT TTTGGCTCTC AAAGATGAGA TCCAAGCTAA GTACCAGTAT
GAAACGCCAA TACGTGTTGG TTGTGGTGGC GGGGTTGGTA CACCTGACGC CGCATTAGCC
ACATTCAATA TGGGCGCAGC CTACATAGTT ACAGGCTCTG TCAATCAGGC TTGTGTTGAA
GCAGGCGCCA GTGAACATAC CCGTAAACTA CTGGCAACGA CTGAGATGGC CGATGTCACC
ATGGCTCCAG CAGCAGATAT GTTCGAGATG GGCGTAAAAC TGCAAGTGGT TAAACGTGGA
ACCCTGTTTC CGATGCGCGC TAACAAGCTC TATGAGATCT ACACCCGCTA TGAGTCTATC
GAAGCGATCC CGTCTGATGA GCGTGAAAAG CTGGAGAAGC AGGTATTTCG CTCAAGCCTT
GATGAGATCT GGGCAGGCAC AGTAGCCCAC TTTAACGAGC GCGATCCTAA GCAGATTGAG
CGCGCCGAGG GCAACCCTAA GCGTAAGATG GCACTGATTT TCCGCTGGTA TTTAGGGCTT
TCTAGTCGCT GGTCAAACTC AGGTGAAGCG GGTCGAGAGA TGGATTACCA GATCTGGGCA
GGTCCAGCAC TGGGCGCCTT TAATCAGTGG GCTAAAGGTA GCTACTTAGA TAACTATCAA
GACCGTAATG CCGTCGATGT CGCTAAGCAC TTGATGTATG GCGCAGCTTA CCTGAACCGT
GTTAATACTC TCACTTCCCA AGGGGTTAAA CTGCCAACAC AGCTACTGCG CTGGAAACCA
AGTCAGAGAA TGGCTTAA
|
|---|
| Protein sequence | MNPTTTSEQL SPWPWAVADS KINFDVNVME QQLKDFSRGC FVVNHSEKGI GIAQEAHVVS
EGSSTQAANG NQPVSAFAPA LGTESLGDSN FRRVHGVKYA YYAGAMANGI SSEELVIALG
QAGILCSFGA AGLIPSRVEA AINRIQKALP NGPYMFNLIH SPSEPALERG SVELFIKHKV
RTVEASAFLG LTPQIVYYRA AGLSRDVQGN VVVGNKVIAK VSRTEVAEKF MMPAPVKMLQ
KLVDDGSITA EQMELAQLVP MADDITAEAD SGGHTDNRPL VTLLPTILAL KDEIQAKYQY
ETPIRVGCGG GVGTPDAALA TFNMGAAYIV TGSVNQACVE AGASEHTRKL LATTEMADVT
MAPAADMFEM GVKLQVVKRG TLFPMRANKL YEIYTRYESI EAIPSDEREK LEKQVFRSSL
DEIWAGTVAH FNERDPKQIE RAEGNPKRKM ALIFRWYLGL SSRWSNSGEA GREMDYQIWA
GPALGAFNQW AKGSYLDNYQ DRNAVDVAKH LMYGAAYLNR VNTLTSQGVK LPTQLLRWKP
SQRMA
|
|---|
| |