Gene Swoo_1382 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1382 
Symbol 
ID6115622 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1738109 
End bp1739248 
Gene Length1140 bp 
Protein Length379 aa 
Translation table11 
GC content48% 
IMG OID641632870 
Productriboflavin biosynthesis protein RibD 
Protein accessionYP_001759769 
Protein GI170725743 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis 
TIGRFAM ID[TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00145542 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000043993 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACTGGT CTGTAGAAGA TATTGAGATG ATGAGCCGCG CCATCAAACT GGCGCGCCAA 
GGTTTATATA CCACGCAGCC AAACCCGTGT GTGGGTTGTG TGGTCACCAA AGATGGACAG
ATCCTCGGCG AAGGTTTCCA TATCAAAGCG GGTGGCCCCC ATGCTGAAGT GCATGCTCTG
GCAATGGCAA ATAGTGATTC CAATTTAGGG GCCAAAGGCG CAACAGCCTA TGTTACCCTT
GAGCCATGCA GCCATTATGG TCGTACACCA CCCTGTGCTG AAGCCCTTAT TCACAATAAG
CTTGCTCGCG TTGTCGTTGC AGTTGAAGAT CCCAATCCTC AGGTCTGTGG ACGTGGTATT
GCCATGCTCA GGGATGCTGG TATTCAAGTT GATGTTGGTT TACTTCAAGA TGAAGCCTAT
AAGATCAATC CCGGCTTTAT GAAGCGTATG GAGACTGGTC TACCTTGGGT GACGGTTAAA
CTGGCTTCGA GCTTAGATGG CAAAACGGCA TTAGCCAATG GCGCTTCAAA ATGGATCACA
GGTCCAGAGG CTCGCCGTGA TGTACAAAGA CTTCGTGCCC GTCACTGCGC CTTGGTGACA
GGTGTTGAGA CCATCTTGGC TGATAATCCA TCACTTAATG TTCGCCATAG CGAGTTGGGT
TCATTAGCCG ATAGGCATAG CGAAAGCGAT CTACATCAAC CACTTCGCGT CGTATTAGAT
AGCCGTGCTC GGGTGACATC AGACTTAGCC CTATTTGCGA TTGAGTCGCC CATTCTTCTG
GTCTCTTGTG ATGATTATCC AGCTATAGAG CAGCAAAGCT GGCCGTCACA TGTTAAGCAG
GTAAAGTTGA ACTGTGATGA GTCTGGGCGT GTGGATCTCA ATGAGCTGTT TAAATATTTA
GGAAAGCAGT GTAACTCAGT GCTTATTGAA GCGGGGGCAA CTTTGGCAGG GAGTGTTATT
GCCAAGGGCC ATGGTGATGA GTTGGTGCTT TATCAGGCGC TGAAAATGTT AGGTTCAAGT
GGACGTAATC TAATCACACT TCCTGAGTAT ACAGCCATGT CACAGATACC GGCTATCAAG
CTTGTCGATG AACGTAAAGT CGGGGCTGAT ACCCGCTTAA CTTTAGATAT AAGGTCATAA
 
Protein sequence
MNWSVEDIEM MSRAIKLARQ GLYTTQPNPC VGCVVTKDGQ ILGEGFHIKA GGPHAEVHAL 
AMANSDSNLG AKGATAYVTL EPCSHYGRTP PCAEALIHNK LARVVVAVED PNPQVCGRGI
AMLRDAGIQV DVGLLQDEAY KINPGFMKRM ETGLPWVTVK LASSLDGKTA LANGASKWIT
GPEARRDVQR LRARHCALVT GVETILADNP SLNVRHSELG SLADRHSESD LHQPLRVVLD
SRARVTSDLA LFAIESPILL VSCDDYPAIE QQSWPSHVKQ VKLNCDESGR VDLNELFKYL
GKQCNSVLIE AGATLAGSVI AKGHGDELVL YQALKMLGSS GRNLITLPEY TAMSQIPAIK
LVDERKVGAD TRLTLDIRS