Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1382 |
Symbol | |
ID | 6115622 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 1738109 |
End bp | 1739248 |
Gene Length | 1140 bp |
Protein Length | 379 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641632870 |
Product | riboflavin biosynthesis protein RibD |
Protein accession | YP_001759769 |
Protein GI | 170725743 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0117] Pyrimidine deaminase [COG1985] Pyrimidine reductase, riboflavin biosynthesis |
TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain [TIGR00326] riboflavin biosynthesis protein RibD |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00145542 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000043993 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAACTGGT CTGTAGAAGA TATTGAGATG ATGAGCCGCG CCATCAAACT GGCGCGCCAA GGTTTATATA CCACGCAGCC AAACCCGTGT GTGGGTTGTG TGGTCACCAA AGATGGACAG ATCCTCGGCG AAGGTTTCCA TATCAAAGCG GGTGGCCCCC ATGCTGAAGT GCATGCTCTG GCAATGGCAA ATAGTGATTC CAATTTAGGG GCCAAAGGCG CAACAGCCTA TGTTACCCTT GAGCCATGCA GCCATTATGG TCGTACACCA CCCTGTGCTG AAGCCCTTAT TCACAATAAG CTTGCTCGCG TTGTCGTTGC AGTTGAAGAT CCCAATCCTC AGGTCTGTGG ACGTGGTATT GCCATGCTCA GGGATGCTGG TATTCAAGTT GATGTTGGTT TACTTCAAGA TGAAGCCTAT AAGATCAATC CCGGCTTTAT GAAGCGTATG GAGACTGGTC TACCTTGGGT GACGGTTAAA CTGGCTTCGA GCTTAGATGG CAAAACGGCA TTAGCCAATG GCGCTTCAAA ATGGATCACA GGTCCAGAGG CTCGCCGTGA TGTACAAAGA CTTCGTGCCC GTCACTGCGC CTTGGTGACA GGTGTTGAGA CCATCTTGGC TGATAATCCA TCACTTAATG TTCGCCATAG CGAGTTGGGT TCATTAGCCG ATAGGCATAG CGAAAGCGAT CTACATCAAC CACTTCGCGT CGTATTAGAT AGCCGTGCTC GGGTGACATC AGACTTAGCC CTATTTGCGA TTGAGTCGCC CATTCTTCTG GTCTCTTGTG ATGATTATCC AGCTATAGAG CAGCAAAGCT GGCCGTCACA TGTTAAGCAG GTAAAGTTGA ACTGTGATGA GTCTGGGCGT GTGGATCTCA ATGAGCTGTT TAAATATTTA GGAAAGCAGT GTAACTCAGT GCTTATTGAA GCGGGGGCAA CTTTGGCAGG GAGTGTTATT GCCAAGGGCC ATGGTGATGA GTTGGTGCTT TATCAGGCGC TGAAAATGTT AGGTTCAAGT GGACGTAATC TAATCACACT TCCTGAGTAT ACAGCCATGT CACAGATACC GGCTATCAAG CTTGTCGATG AACGTAAAGT CGGGGCTGAT ACCCGCTTAA CTTTAGATAT AAGGTCATAA
|
Protein sequence | MNWSVEDIEM MSRAIKLARQ GLYTTQPNPC VGCVVTKDGQ ILGEGFHIKA GGPHAEVHAL AMANSDSNLG AKGATAYVTL EPCSHYGRTP PCAEALIHNK LARVVVAVED PNPQVCGRGI AMLRDAGIQV DVGLLQDEAY KINPGFMKRM ETGLPWVTVK LASSLDGKTA LANGASKWIT GPEARRDVQR LRARHCALVT GVETILADNP SLNVRHSELG SLADRHSESD LHQPLRVVLD SRARVTSDLA LFAIESPILL VSCDDYPAIE QQSWPSHVKQ VKLNCDESGR VDLNELFKYL GKQCNSVLIE AGATLAGSVI AKGHGDELVL YQALKMLGSS GRNLITLPEY TAMSQIPAIK LVDERKVGAD TRLTLDIRS
|
| |