| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1370 |
|---|
| Symbol | |
|---|
| ID | 6115610 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 1725685 |
|---|
| End bp | 1726419 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 641632858 |
|---|
| Product | short chain dehydrogenase/reductase family oxidoreductase |
|---|
| Protein accession | YP_001759757 |
|---|
| Protein GI | 170725731 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00053565 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATAACTC AACAAACTTT AATCATTGGG GCAAGTAGCG ATATTGCAGT AGCCATAGCG
ATTCAGGTAG AGAAAATAGA CAGTACAGGA TTAGTGTTAG TCACCCGAGA CTTTAGCGCT
TATTCAGAAA TAATTGACGA TAATATCAAC AAAATATTAA TTGAAGATTA TCAATCGGCA
TCGATTGAAG CCGTGATCCG TCAGCTAGCA CAATTAGATC ATGCTCCTAT TACCCAAGTA
TTCATCTGTC ACGGCGTACT GCATACTCAG CAGATTAAGC CTGAAAAACG ATTAGAGGAT
CTAACAGCAG CATCATTTGA ACAAGTCATG ATGATAAATG CACTCACCCC CATACTGTGG
CTGCAAAAAT TAACACCACT GTTAACCAGT TCAATCCCCT GCAAGATCAC TGTATTTAGT
GCTCGAGTTG GCAGCATTAG TGATAATCGT CTAGGTGGGT GGTACAGCTA TCGCGCCTCA
AAAGCAGCCC TCAATATGAT GCTTAAAACT GCCGCAATTG AGCTAGCTCG GCGGGCTAAA
AACATCAAAA TTATCGCCTT TCACCCAGGA ACCACTGATA CAGCTCTTTC AAAACCGTTT
CAAAAAAATG TACCACCGGG GAAGCTTTTC TCTTGCGAGT TTGTAGCTAA GCAACTGCTA
GAAATTGTTG AAAAGTCTGA ACTCGATAGC ACATTAAGTT ATCTTGATTG GCAAGGAAAG
GCGATCAGTT GGTGA
|
|---|
| Protein sequence | MITQQTLIIG ASSDIAVAIA IQVEKIDSTG LVLVTRDFSA YSEIIDDNIN KILIEDYQSA
SIEAVIRQLA QLDHAPITQV FICHGVLHTQ QIKPEKRLED LTAASFEQVM MINALTPILW
LQKLTPLLTS SIPCKITVFS ARVGSISDNR LGGWYSYRAS KAALNMMLKT AAIELARRAK
NIKIIAFHPG TTDTALSKPF QKNVPPGKLF SCEFVAKQLL EIVEKSELDS TLSYLDWQGK
AISW
|
|---|
| |