| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1357 |
|---|
| Symbol | |
|---|
| ID | 6115597 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 1707307 |
|---|
| End bp | 1710429 |
|---|
| Gene Length | 3123 bp |
|---|
| Protein Length | 1040 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641632845 |
|---|
| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
|---|
| Protein accession | YP_001759744 |
|---|
| Protein GI | 170725718 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000452964 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATTAGTG ACTTTTTTAT TAATAGGCCT AAATTTGCCT TTGTGATCTC AACGGTGCTG
ACGATTGTCG GCCTTATCTC TATTCCTATC TTGTCGGTGG CGGAGTTTCC AGAGATCGCA
CCGCCGCAGA TTAATGTCTC TACTAGCTAC TCTGGTGCTA GTGCCAACAT AGTGAAAGAC
ACCATAGCTC AGCCAATAGA GGCTGAGGTG AATGGTGTCG AAGGCATGCT CTACATGCAG
TCAAAGAGTG CCAATGATGG CAGCTACTCT TTGAGTGTGA CCTTTGAGGT GGGTACTGAT
CCTGATATGG CTCAGGTAAA AGTACAAAAC CGAGTTCAGC AGGCGATGCC AAGGCTGCCT
GAAGAGGTTA AACGTCAAGG GGTTAACGTA GAGAAACAGA GCGCGAATAT CTTGATGGTG
GTGAACTTGG TTTCGCCAAA GGAGACCTTC GATTCTCTGT TTATTACCAA CTATGCGGGC
TTAAATGTCA CCGATGCGTT AGCACGTCAA AATGGTGTGT CGAAAGTGCA GGTGATTGGT
GCTCTCGACT ATGCGATTCG GATCTGGCTA GACCCGAATA AGATGGCAAG TCTTGGGGTG
ACGGCCAAAG ATGTGATTGG CGCTCTGCAA GAGCAGAACA TTCAGGTTGC CGCTGGACGT
ATCGGTGCTG CACCTGTGGA TCCTGATCAG CAGTTTCAAT ACACGCTTCA GACAAAAGGT
CGCTTGAAAG ATCCTAAAGA GTTCAGAAAT GTGATGATCC GCGCTAACAA TGATGGCTCT
AAGGTGATTG TTGGAGATGT TGCGCGTGTA GAGCTGGGCT CACAAACGTA TGATGCTCAG
GGTAAGCTAA ATAATAAGCC GTCGGCGATT ATCGCTATTT ATCAATCTCC AGATGCCAAT
GCATTGGATG TGGGTAAAGC GGTTAAAGCT GAGATGGCGA AACTGTCTGA GCGTTTTCCG
AATGATCTCG ACTATGAGGT GCTATATGAC ACCACAGAGT TTGTTGAAAC TTCGATTAAT
GAAGTGGTGC AAACTCTATT TATCTCGATA GCACTCGTGG TCTTTGTAGT GTTTATCTTC
CTGCAGGATG TCCGCTCTAC TTTGATCCCT GCGATTGCCA TTCCTGTCTC CCTAATTGGT
ACGTTTGCCT TCCTATTGGC TTTTGGAATG AGCATCAACA CGGTCTCGCT ATTTGCGTTG
ATATTGGCTA TCGGTATTGT GGTCGATGAT GCGATTGTGG TGGTGGAGAA CGTAACACGC
CTAATGCAAG ATGAGGGCTT GTCACCAAAA GAAGCGACCT CTAAAGCGAT GAAAGAGGTG
ACAGGTCCCG TTATTGCGAC CACTTTAGTG TTACTGGCGG TGTTTGCTCC TACAGCGGTT
ATGCCAGGAA TAACAGGTCA GATGTATGCA CAGTTCTCCG TGACTATCTG TATCTCTGTA
CTAATCTCGT CTATTAACGC ATTGACATTG AGCCCAGCGC TTTGTGCGTC ACTACTGCGA
CCACCTAAGC AACATACTAA AGGCTTCCAC GCCACGTTTA ACAAGTACTT TGAACGTGTG
ACTGGTAAGT ATATGGGATT GGTTTCATCA CTCACCCGTA AGCTCTCTTT GGTTTTAGTC
GTGTATGCTT GTTTGATTGC GGTGACTGGA GGAGTGGCGA AGATATTACC ATCAGGGTTT
GTGCCAATGG AGGATAAAAA AGCCTTTATG GTGGATATCC AACTACCTGA TGGCGCTTCA
TTGAACCGAA CCGAAGAGGT GATGAAAGAG CTGGTGGAGC TGACGTTAGC AGAGCCAGGT
GTTGAGAATG TGATCCATGC AAGTGGCTTT AGTATTTTGA CTGGCTCAGT TGCTTCAAAT
GGTGGTTTGA TGATCGTTTC CCTTTCTACT TGGGATGAGC GTGATACTCC AGATATGGTG
GAGTCAGCCA TTGTTGCTAA GCTGCAGGCG AAATACGCGG CTAACCCATC AGTGAAGGCG
ATGGCATTCT CGCTACCACC GATCCCTGGA GTGGGAAGCG TAGGTGGTTT TGAGTTTGTA
CTACAAGACA CTCAAGGGCG AACACCACAA GAGCTGGCAT CTGTAATGCG CGCCTTGATA
ATGAAGGCAA ATAGTCAACC TGAAATCGCC ATGGCCTTCA GTAATTTCCG CGCCGATGTG
CCACAGATGT ATGTGGATGT TGACAGGGAT AAGGCTAAGG CGCTTGGTAT ATCGCTCAAT
GAGATTTTCA CAACCATGCA GACCATGTTG GGCTCTATGT ATGTGAATGA CTTTAACCGT
TTCGGTAAAG TGTTTAGGGT GATTTTACAG GCAGAAGGAG AGTTTCGTAA CTCAGATCAA
GATATCTCGC GCTTTTATGT TCGCTCTAAT ACAGGGGAGA TGGTGCCTCT GAGCACCTTA
GTTAAAGTCA CGCCTATCCT AGGGCCGGAT GTGATGAACT CCTATAATAT GTTCAACTCC
ACAACGATTA ACGGTTTCCC TGCACCAGGA TTCAGTTCAG GTGATGCCAT CACTGCGATG
GAGAGGGCTG CGAATGAGAC GCTGCCAACA GGGTATACGT TTGAGTGGAC GGGACAAACC
TATCAGGAGA TCAAAGCGGG TAACTTAGCA CCCTTGATCT TTGGCTTAGC ACTTCTATTC
ACCTACCTGT TTTTGGTGGC GCAATATGAG AGCTGGACAA TTCCATTTGC GGTTATTCTG
GCGGTGCCCA TAGCGGTACT TGGCGCCTTC TTGAATATCT TGCTGGTGGG CTCAGATCTG
AACCTTTATG CCCAGATTGG CTTAGTGTTG CTGATAGGAC TTGCCTGTAA GAACGCTATC
TTGATTGTGG AGTTTGCTAA GCAATTAAGA GAGGAGGGTA AGAGTATCCT CGATGCGGGT
GAAACGGCGG CAAGACTACG TTTCCGGGCG GTATTGATGA CAGCATTCTC CTTCCTACTT
GGGGTGTTGC CTTTGGTTAT TGCCACAGGT GCGGGCGCGG GAAGCCGTCG TGCACTGGGT
TATTCCGTGT TTGGCGGTAT GTTGGCTGCA ACCATAGTAG GTACGCTACT AGTGCCTGTA
TTCTACGTGA TGATGCAGAC AATGAGAGAG AAGTTTAAAG GTAAAGCAAA AGCTGCTGAG
TAG
|
|---|
| Protein sequence | MISDFFINRP KFAFVISTVL TIVGLISIPI LSVAEFPEIA PPQINVSTSY SGASANIVKD
TIAQPIEAEV NGVEGMLYMQ SKSANDGSYS LSVTFEVGTD PDMAQVKVQN RVQQAMPRLP
EEVKRQGVNV EKQSANILMV VNLVSPKETF DSLFITNYAG LNVTDALARQ NGVSKVQVIG
ALDYAIRIWL DPNKMASLGV TAKDVIGALQ EQNIQVAAGR IGAAPVDPDQ QFQYTLQTKG
RLKDPKEFRN VMIRANNDGS KVIVGDVARV ELGSQTYDAQ GKLNNKPSAI IAIYQSPDAN
ALDVGKAVKA EMAKLSERFP NDLDYEVLYD TTEFVETSIN EVVQTLFISI ALVVFVVFIF
LQDVRSTLIP AIAIPVSLIG TFAFLLAFGM SINTVSLFAL ILAIGIVVDD AIVVVENVTR
LMQDEGLSPK EATSKAMKEV TGPVIATTLV LLAVFAPTAV MPGITGQMYA QFSVTICISV
LISSINALTL SPALCASLLR PPKQHTKGFH ATFNKYFERV TGKYMGLVSS LTRKLSLVLV
VYACLIAVTG GVAKILPSGF VPMEDKKAFM VDIQLPDGAS LNRTEEVMKE LVELTLAEPG
VENVIHASGF SILTGSVASN GGLMIVSLST WDERDTPDMV ESAIVAKLQA KYAANPSVKA
MAFSLPPIPG VGSVGGFEFV LQDTQGRTPQ ELASVMRALI MKANSQPEIA MAFSNFRADV
PQMYVDVDRD KAKALGISLN EIFTTMQTML GSMYVNDFNR FGKVFRVILQ AEGEFRNSDQ
DISRFYVRSN TGEMVPLSTL VKVTPILGPD VMNSYNMFNS TTINGFPAPG FSSGDAITAM
ERAANETLPT GYTFEWTGQT YQEIKAGNLA PLIFGLALLF TYLFLVAQYE SWTIPFAVIL
AVPIAVLGAF LNILLVGSDL NLYAQIGLVL LIGLACKNAI LIVEFAKQLR EEGKSILDAG
ETAARLRFRA VLMTAFSFLL GVLPLVIATG AGAGSRRALG YSVFGGMLAA TIVGTLLVPV
FYVMMQTMRE KFKGKAKAAE
|
|---|
| |