| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1333 |
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| Symbol | |
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| ID | 6115573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1685136 |
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| End bp | 1686173 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641632821 |
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| Product | twitching motility protein |
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| Protein accession | YP_001759720 |
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| Protein GI | 170725694 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0112575 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAATCA CAGAGTTACT TGCCTTTAGT GTAAAGCACA AGGCGTCAGA TCTACACCTC
TCTGCAGGTG TTTCTCCTAT GATACGTGTT GATGGTGAAG TCAGAAAGAT CAATTTACCT
GCGTTAGATC ATCAAGGGGT CCATGGACTC GTTTATGACA TCATGAATGA TAAGCAGCGC
AAAGATTATG AGGAGCATTT AGAGATAGAT TTCTCCTTTG AAGTGCCTAA TCTTGCTCGT
TTTCGTGTTA ACGCCTATAA CCAGTCTCGA GGCGCTGCTG CGGTATTTCG TACCATTCCC
AGTGATATCT TAAGCCTTGA GCAACTTGGT GCTCCAGAAA TTTTCAAGAA GATATCTGAT
TTCCCTCGTG GCTTAGTGCT CGTTACTGGG CCGACAGGTT CAGGTAAAAG TACCACCCTT
GCGGCCATGA TTGATTATAT TAATGACAAC CGCCATGAGC ACATTCTTAC TATTGAAGAC
CCAATAGAAT TCGTGCATCA AAATAAGCAA TGTTTGATTA ACCAGCGTGA GGTGCATCGC
CACACTCACA GCTTTAACGC TGCACTAAGA AGTGCGCTGC GTGAAGATCC AGATGTCATT
CTTGTTGGTG AGATGCGTGA TTTAGAAACC ATACGTTTAG CGATGACAGC GGCGGAAACC
GGTCACTTAG TCTTTGGAAC CTTGCACACC ACTTCAGCGG CTAAAACCAT TGACCGTGTT
GTTGATGTAT TCCCTGAAGG GGAGAAGGGG ATGGTTCGAA CCATGTTATC TGAATCTCTT
CAGGCGGTGA TTTCACAAAC CTTGATTAAG AAGGTGGGCG GTGGCCGAGT GGCGGCTCAC
GAGATCATGA TGGGAACTCC CGCGATTCGA AACCTTATTC GAGAGGATAA AGTGGCGCAG
ATGTATTCAG CAATTCAAAC CGGTATGGCT CATGGTATGC AGACGTTAGA TCAGTGTCTG
CAGAATCTGG TTAATCGTGG CCAGATATCC CGTGAAGATG CACAGCATAA GAGTGCCAAT
AAGCAAACTA CGTTCTAA
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| Protein sequence | MEITELLAFS VKHKASDLHL SAGVSPMIRV DGEVRKINLP ALDHQGVHGL VYDIMNDKQR
KDYEEHLEID FSFEVPNLAR FRVNAYNQSR GAAAVFRTIP SDILSLEQLG APEIFKKISD
FPRGLVLVTG PTGSGKSTTL AAMIDYINDN RHEHILTIED PIEFVHQNKQ CLINQREVHR
HTHSFNAALR SALREDPDVI LVGEMRDLET IRLAMTAAET GHLVFGTLHT TSAAKTIDRV
VDVFPEGEKG MVRTMLSESL QAVISQTLIK KVGGGRVAAH EIMMGTPAIR NLIREDKVAQ
MYSAIQTGMA HGMQTLDQCL QNLVNRGQIS REDAQHKSAN KQTTF
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