Gene Swoo_1309 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1309 
Symbol 
ID6115544 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1657525 
End bp1658400 
Gene Length876 bp 
Protein Length291 aa 
Translation table11 
GC content42% 
IMG OID641632792 
Producttype IV pilus assembly protein PilM 
Protein accessionYP_001759696 
Protein GI170725670 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.701757 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.756364 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCTTCA TGCTACGACT TCGAATTAAG CTTCTCCTCA TCTCTCTATT ATCCGTTTTC 
TGTTTAACCC CTAATGCTTA TAGTGAAACA CTCGTCACCA CTATTCCGCA AAGTTGGCAA
CTTAATTTAT TGAAAGAAGC CCTATCTCGT GTGGAAACTC AATACGATAT CTCAATGCTT
GACACTGAAA TGAATCAAAA ACGTAAGGTG GAAGAGGCGT TAGCTGGAAG CATTGACATA
TTTTGGAGCA TGACATCACA GCAACTTGAA GCGGTTGTGC TCCCAGTCAG AATCCCGATA
TTTAAAGGCT TGTTGGGTAA TCGTTTACTG ATCATTAGAA GCGATGAGCA GCAGCGTTTT
ATCGATGTCA AAAGCAGAGA TGACTTTCTG CAGTTTTATG CAGGGCAAAA TCGCTATTGG
CCTGATGCGC TTATTCTTGA AGAGAATGGC TTACCTCTAA TTACCAGCTA TAAATATAAA
AATTTGTATC CAATGTTAGA GGGAGGGCGT TTTGATTATT TAGCTCTTGG TGCTCAGGAG
ATCTGGCAGG AGTTAGATAA AAACCCTGAT CCTAATTTGA AGGTAGATAG TGCCATCTTG
CTGCAGTACC GCTCGCCTGC TTACTTCTTC ATCTCCCCAG AAAAACCTTT ACTTGCTAAA
GACTTAAAGA AAGGACTAGA GAGCATGATT GCCGATGGCA GTTTTGATCA GCTGTTCAAT
AAGGAGCTCG AGATTGATGC GCTCTATGAG CAAGCACAAT TTAGCAAACG TAGGATTATT
CGACTACAGA CACCTGGATT GAGTTCATTA ACACCCGTAA CTCGTGATGA GCTGTGGCTT
GATCTATTTA ATATGGAGGG GAAGGGCGAT GAATAG
 
Protein sequence
MRFMLRLRIK LLLISLLSVF CLTPNAYSET LVTTIPQSWQ LNLLKEALSR VETQYDISML 
DTEMNQKRKV EEALAGSIDI FWSMTSQQLE AVVLPVRIPI FKGLLGNRLL IIRSDEQQRF
IDVKSRDDFL QFYAGQNRYW PDALILEENG LPLITSYKYK NLYPMLEGGR FDYLALGAQE
IWQELDKNPD PNLKVDSAIL LQYRSPAYFF ISPEKPLLAK DLKKGLESMI ADGSFDQLFN
KELEIDALYE QAQFSKRRII RLQTPGLSSL TPVTRDELWL DLFNMEGKGD E