| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1305 |
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| Symbol | |
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| ID | 6115540 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1650851 |
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| End bp | 1653553 |
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| Gene Length | 2703 bp |
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| Protein Length | 900 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641632788 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001759692 |
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| Protein GI | 170725666 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.988822 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATACTA AAAAAAATAA AATAGAGTTA TGGAAGGGAA ACGAGATGCG AACATCTAAT
TTTAAGAAAA GTATATTAGC GACAAATATC GCTTTAATGC TTGGTACGGC AGTCTCTATG
TCTGCTGTGG CAGCTGAAGC GGACTCTGCA CCTACAGCAG ATGAAAATAT TGAGAAGATT
GAAGTGCGTG GTCTTCGTGC TTCAAATAAA GCCAACATTA ATGAGAAACG TTTTTCAAAT
GCTGTTGTTG ATGCCGTAAC TGCAGAAGAT ATTGGCAAGT TTCCTGATTC AGACGTAGGA
CAAGCATTGG GTCGTGTCCC TGGTGTGAGT GTTGGGCGTA CTTTTGGTCA AGGTAGCTCT
GTGTCAATTC GTGGTACTGA TCCCTTGATG ACGTTGACTA CTTTGAACGG TCAAAATGTC
GCTTCAACTG GTTGGTATGA TCAGATGAAC GTTGATCGCT CTTTCAATTA TTCAATGCTG
CCATCTGAGC TTATTGGCGG GATGGAAGTC TACAAGTCGA GCCAAGCTAA CCTTGTCGAA
GGTGGTATCG GTGGTACTGT TATTGTAAAA ACACGTAAAC CACTTGATAT GGAAGCCAAC
TCAGTATTTG GATCCGTAAA AGGCGAATAC GGAACTGTTA ATGAAGAGTG GGCTCCAGAG
CTTTCTGGTC TATATAGCTG GAAGAACGAG TCAGAAACAT TCGGTATCCT TCTTGCGGGT
TCATATATCG ATCGTGAGTA TCTACGTACA GGGACTGAAG CCGACTTAGA TTGGGGCGGA
CGTTCATCAA TTCAGCCTTC AAGCTTCCTT CAAGAGCAAG AGCGTACAGC GGTAGATGCA
ACAATTCAAT TTAGACCGAC TGATAATCTT GAGTTTGGTG CGCACATTCT ATCTATGCAG
TTAGGTGCCG ATAGTATTGG TGCTAACATG TACATTGAAA CTGACACAAA CTGGGGCGCT
GGTGACTCTA ACTGTCAGAA GTTCAATGCT GCTGGTGTTT GTGTGTTAAG TGTCACTCCT
GAAAGTGCAC CAACAGATGT TTTCTATCAG AACTGGGCTC GTAAAGGTGA GATGACATCT
GATACTTTCG AGCTTAATGC TGAGTATGAA GGTGATGGCT ATACACTATC TGCCGTTGCT
GGTAATACTA AAGCTGAGGG TGGTACTCAA ATGAGTGCAA ACTTCGGTTA TGGCTGGTGG
GGTGATAACT TCGGTCAAGT AAAATGGGCC GGTACGGTTG ATGCAACAGG TAAGCAGATC
GACATCAATG GTCGTGATAT GAGCTTCACT CAAGATCAAC TGGATACGAC AGTAGGAACG
TCACAATGGA CTGGTGTACA AGGTCCTAAC CGTGATGAAG AAAATTATGT TCAGTTCGAT
GCCGACTTTG ATATTGATAT GGGCATCTTA ACTAAGTTTG AAACAGGTAT TCGCTATACT
CAGCATGAGT TTGAAAAGTC TGAGAACAAA GCAGTTTATG ATCCAAATAA AGCGAACTCA
TTCAATACTT CTGATCTATA CAGCGGTACG ATGAAGTTAG GTTATGACGG TTGGACAATC
CCTAAAGCAA ACCTAGATGC GATGATAGAC TCAACTGTCT CTCTTGTTGA TGAGTTTGTT
TATAACCGTG CTGCCTATGG TTTAATTGAA GAAGATAACT TATCTATTTA CGGTATGTTC
TCATTCCAAG GCGACGATTT CCGCGGTAAC TTCGGTGTGC GCTATATCAG TACTGATGTG
ACCTCTAGCG GCCATGTCAT CGATAACTCT CCTGCTGATA AACTTGGCGT TAATGCTGGT
TGGAGTGAAG AAGTTCATAG TGAGAGTGAT GATTACGCAG ATGTTTTACC AAGCTTTAAC
CTTTCCTATA ATGTGACTCA AGACGTAATC ATTCGTTTTG CAGCAGCTCA AGCTATTACA
CGTCCTAACT ATGATAACTT GTTCCTATCA AGTGTTTCTG GCTACCCAGA TGATCGTCGT
GGTAACGAAG AGATTACTTA CGGAAATCCT GGACTGAAGC CAATGAAGTC TTCACAGGTT
GATGTAAGTC TTGAGTACTA TTATGGCGAC GGTAACCTAG TTTCAGCAAC TTACTTCACT
AAAGATATCA GTGATTTTAT CGTTGCAACA ACTAAGTACA ACCAACAGAT TGGCGTGATT
AACAATGATC TAGAAACTCC AGCTGATGAT TGGACCGTGA ATAACTTTGA AAATGCCAAT
GATGGTCAGA TTGACGGTAT CGAGCTTCAG TTAATTCACG CATGGGACAA TGGTTTTGGT
GTTAACGCTA ACTACACATT TGCCAACGGT ACAGCGCCTT CTGAAGTATA TACTGACAGC
ATAGGTATAT TTACTGAGTC ATCTGAGCAC ACTGCTAACT TAGTGGGCTT CTGGGAAAAT
GATGATTTCT CTGCTCGTGC TGCATATAAC TGGCGTTCAG AGTACATGAT CCGTGAATAC
GGTAAGTACT ATGGTAACCG TATGCATGAT GACTTCGGTA CTTTAGATGT GACATTAGGT
TGGAACATTA CAGAAAACAT CGGTCTACAA CTTGAGGTTG TTAACTTGAC TGCTGAAGAT
GATGTTCAGT ACGGTGCAGC TGCTGCCGGA ACAGATGTTA AACCAGCACT TCAAGATGAC
TTCCCAACTT GGTCATTTAA AGGTGAAACA ACCTACAAGC TAGGTGCAAG TTTCCGCTTC
TAA
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| Protein sequence | MDTKKNKIEL WKGNEMRTSN FKKSILATNI ALMLGTAVSM SAVAAEADSA PTADENIEKI
EVRGLRASNK ANINEKRFSN AVVDAVTAED IGKFPDSDVG QALGRVPGVS VGRTFGQGSS
VSIRGTDPLM TLTTLNGQNV ASTGWYDQMN VDRSFNYSML PSELIGGMEV YKSSQANLVE
GGIGGTVIVK TRKPLDMEAN SVFGSVKGEY GTVNEEWAPE LSGLYSWKNE SETFGILLAG
SYIDREYLRT GTEADLDWGG RSSIQPSSFL QEQERTAVDA TIQFRPTDNL EFGAHILSMQ
LGADSIGANM YIETDTNWGA GDSNCQKFNA AGVCVLSVTP ESAPTDVFYQ NWARKGEMTS
DTFELNAEYE GDGYTLSAVA GNTKAEGGTQ MSANFGYGWW GDNFGQVKWA GTVDATGKQI
DINGRDMSFT QDQLDTTVGT SQWTGVQGPN RDEENYVQFD ADFDIDMGIL TKFETGIRYT
QHEFEKSENK AVYDPNKANS FNTSDLYSGT MKLGYDGWTI PKANLDAMID STVSLVDEFV
YNRAAYGLIE EDNLSIYGMF SFQGDDFRGN FGVRYISTDV TSSGHVIDNS PADKLGVNAG
WSEEVHSESD DYADVLPSFN LSYNVTQDVI IRFAAAQAIT RPNYDNLFLS SVSGYPDDRR
GNEEITYGNP GLKPMKSSQV DVSLEYYYGD GNLVSATYFT KDISDFIVAT TKYNQQIGVI
NNDLETPADD WTVNNFENAN DGQIDGIELQ LIHAWDNGFG VNANYTFANG TAPSEVYTDS
IGIFTESSEH TANLVGFWEN DDFSARAAYN WRSEYMIREY GKYYGNRMHD DFGTLDVTLG
WNITENIGLQ LEVVNLTAED DVQYGAAAAG TDVKPALQDD FPTWSFKGET TYKLGASFRF
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