Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1298 |
Symbol | |
ID | 6115533 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 1643327 |
End bp | 1646887 |
Gene Length | 3561 bp |
Protein Length | 1186 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641632781 |
Product | type IV pilin biogenesis protein, putative |
Protein accession | YP_001759685 |
Protein GI | 170725659 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.991628 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAGTTA AACATGTTGC ATGCGTAGCT TTATTTGTTT TAGTTGGTAT ATCGGCAGGA ACCTTTGCTG ATGATACTGA TCTCTATGTT GTAGAGTCTT CTGTAAGAAC GGGAGCGAAC CCTAAAGTAT TGATAATTTT TGATAACTCA GGAAGCATGA CTACCATTGA GGAGGATGCA CCTGGCGCTT ATGATTCCAC CACCACCTAT GAACCCATTA GCTCAGCCCA CGCGTATCAA GATGATAAGA TCTACTTCAC AAAAGGGATA GGTATCGATA ATGCTGGTAT GGACATTCCC TTAAGCCCCT CTGATTCAAG ACGCTTTTTA AAAGATATCA ATGGCTGTCA TCAAAGCTGG GATCTTATTG AGCGGTATGG GCGTTTCACT GGCTTTGTTG GTGAGTATAG AATAAAGGGG AAAACGGGCT CTTGGGGGGA GTTACGAGAT AACAGTGGGG CTAACTATGA CACCATAGAT TGCCTTGAGG ATATTCAGGA AAATGATCCT ATCAATGCCA AAGACAAAGA TGGTAATGCC CATGGTGACG GTTTTCCTGT CGATGGAATG AGACAGGGTA ATACCCCTAA GCCCTATAGC ACAACAGGCG GAGATACTCA GCTTGGGTTA GGTGAAGCAG TTACTCTCTA TACGGCCAAT TATCTTCGCT GGCATGCGGC TGCTGTTGCT GACGCGTTAC CAACTAGCCC ACAATCTCGT TTAGACATTG CGAAAACGGC AATTGAGACA GTGATTAACA CGAATACCTC GATAGATTTT GGGTTAGCTC TGTTTAATAT GAACTATCCA TCAGAGGGCT ACCGAGATGG CGGGAGAATC GTGTCTAAGA TACAGAAGAT GTCTCCGGCA AATAAAACTG CGCTTTTATC TACCATAGAT GGGATCCCAG CAGATACAAA CACCCCTCTT TGTGAAACTT TATTTGAAGC TTATAAGTAC TTTTCGGGTA AGCCAGTGCT TTATGGTAAA AAGGATTCTG ATTACTCAAG TTGGTATGAT GGTAATAAAC CTCCTAGAGA TACTAGCGCA GAGTCTGGTC TGAACTACTC CTCGCCATTT AGAGTTTGCC CTGATATAGC CTACGTTATC TATATTACTG ATGGTGTGCC AACTCAAGAC ACCTTCGCTG ATACAGATAT AACAACACTC ACAGCTAGTG GAGTAACAGA GAAGGCTGAT GATAAAGTGG TTGCTCCAGA TTATTCTGTT TTCTCTGATC CAGGCTTAAG CTCTCCAAGT TATCTCCCAG CGTTAGCAAG TTATCTTTAT CATAACGATC TAGTCACTTC ACCAGAGACT TTGAGTGATG GCTCTACAAG AGAGCATATG CAAACAGTTA AAACCTTTAC TATCGGTTTT AGCTCTGGTG CTGAGGATGC CGAAGCGCTA TTGAAAGAAA CTGCGAGGAG AGGCGGGAAC AAAGTCGATG ATAATGGTGT TAATACCGGT TATTTCCAAG CTACGGGAGG CTTAGGACTC GTTGCCGCCA TGAATGATGC ACTCCTATCT ATTATGGAGA CTGATGCCAG TTTTACCTCT CCTAGTATCG CAAGTAATAA CTTTGATAGA ACTCAAACTT TTGATGCGGC CTATTATGCG ATGTTTCTAC CAGGGAGAGG CCCTAGATGG AGTGGTAACC TTAAAAAGCT TAAAGTGACT TCAGGTGGTG TTCTGGTGGA TAAGTCTGGT GGTGTTGCTA TCGGTGATGC TGGAGATATT AAAGACACCG CATGTACTTT CTGGAGCTTA TGCACAAGTA AGTCTGATGG CAAAAGTGTT CTAGAGGGGG GAGTAATAGA AGCCCTACAG AGAGCAACAC CCTCTACCGG GATAAGTGCT CGTACTATCT ACTCAAATTT GACTAACCCT ATGTCGGATC TTGCTCAAGT TTCAGAATCC ATTCTCTCAA CCAGTATGGG GATAGTTGAA GCCGATGTCA GTGATACGGT TAAGTGGTTA TATGGTTATG ATGTTGATGG TGATAACCCA GGTGGAAGTG CAACTGATTA TCGCAGTGAT ATTATGGGAG ATCCTCTGCA CTCAAAGCCA TTAGCGCTGA ACTTTGGCAC AAAGACGAGC CCTGATATCC GTATTGTTTT AGGAACTAAT CAAGGCTTAG TTCATATGTT TAAAGATACA GGAGATGAAG TTGAAGAGAG TTGGGCTTTT ATCCCTACAG AACTCTTAAG CAATGTTCCT GTGTTGAAAC AAAATGTGGC TAATGGTGGC CATTATATTT ACGGCATGGA TGGTTCCCCT GTTTCTTACA CTGAGACTGA CTCGTCAGGG AGAGTGAATA AAGCTTGGGT GTTTATGGGG ATGCGCCGTG GTGGTTCCTC CTATTATGCA CTAGATGTCA CCTCTCCAGA TTCGCCTAGT GTTAAATGGA TTATAACTCC TGATAGTTCA GGTTTTGCTG AGCTTGGGCA GTCTTGGTCT GAACCTATTG TGACGACTAT TCCGGGGCAT TCTGGTCCTG TTCTGATATT TGGTGGCGGT TATGATGCTC CGCTTTATGA TGCTGATACT GTTCCTAGTA CTGCTGCGAG TAAAGGCAAA GCTATCTATA TAGTTGATGC CGATACAGGT GCCTTAGTGC ATGCATTTAC AGATACTGGA GTTGGCGGGA CTAAAATGGA TGGACTTGTT GACAGTATTC CAAACTCTGT TGCGATTTTG GACAGCAACA ATGATGGTGA CACCGATAGA ATCTATGCCA CGGATGTAGG TGGTCATGTA TGGAGGATTG ATCTAGCAGA GTCAACAAGG AGTACATGGA GCTCTTATAA GTTTGCAGAT CTAGGTGGAA GTACAGCCAT TAATGATAGG CGTTTTTTTG CGGAGCCTGC TGTGGCTCAA ACGACTTTCA GTAACATCTC CGAAGTTGAA GTGACTGATG GAGAGGGCGC GACAACGACA ACTACCTCAT ATCAAAATGT TCCCTATGAT GCCGTTGTTA TTGGTAGTGG CAGTCGTCCC CACCCTACGA GTGTAGTGAC TTCAGACAAG TTCTTTGTAC TGCAAGATCG TAATGTCGTC ACTCGAAGTG TGATAGGGGA GCCTGTTCCA GAAGTGCTAG ATATGAGTAA ACTCTACAAT GTTACCTCTA CACCACCAGT TACCGAGGCT GAAAATATCT CCTTTGGAAC AAAGCGGGGA TGGTACTTTG ATTTTACGGG TTCTGGTGAA AAGTCTTTAA CTGCGGCTCT AATTATCGAT GGCAAGGTTT TCTTTACCTC TTTCTTACCG TCAGTGAACG AGGTTTCAGA TCTAATTTGT AGTAGCTCTG GTCAAGGTCG ATTATATGTG TTTGATCTTC ATAGAGGGAC GCGAAGTTAT GAGAATGTCT ATTATGAGTT AGGAGAGCGT GTACCAGATA CCCCTCAAAT AGTGGTCCCA GCTCCAGAAA CAGGTGAAGA CCCCTATATC TATATTATTG GTGTAGGGAA AGGAGAGATT AAAGATGGAG CGCCAACAGG AACCATTAAT GTAGGGGCGG GTTTAGGCGT TAATAAGATC TATTATCATA TCGATGAGTA G
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Protein sequence | MIVKHVACVA LFVLVGISAG TFADDTDLYV VESSVRTGAN PKVLIIFDNS GSMTTIEEDA PGAYDSTTTY EPISSAHAYQ DDKIYFTKGI GIDNAGMDIP LSPSDSRRFL KDINGCHQSW DLIERYGRFT GFVGEYRIKG KTGSWGELRD NSGANYDTID CLEDIQENDP INAKDKDGNA HGDGFPVDGM RQGNTPKPYS TTGGDTQLGL GEAVTLYTAN YLRWHAAAVA DALPTSPQSR LDIAKTAIET VINTNTSIDF GLALFNMNYP SEGYRDGGRI VSKIQKMSPA NKTALLSTID GIPADTNTPL CETLFEAYKY FSGKPVLYGK KDSDYSSWYD GNKPPRDTSA ESGLNYSSPF RVCPDIAYVI YITDGVPTQD TFADTDITTL TASGVTEKAD DKVVAPDYSV FSDPGLSSPS YLPALASYLY HNDLVTSPET LSDGSTREHM QTVKTFTIGF SSGAEDAEAL LKETARRGGN KVDDNGVNTG YFQATGGLGL VAAMNDALLS IMETDASFTS PSIASNNFDR TQTFDAAYYA MFLPGRGPRW SGNLKKLKVT SGGVLVDKSG GVAIGDAGDI KDTACTFWSL CTSKSDGKSV LEGGVIEALQ RATPSTGISA RTIYSNLTNP MSDLAQVSES ILSTSMGIVE ADVSDTVKWL YGYDVDGDNP GGSATDYRSD IMGDPLHSKP LALNFGTKTS PDIRIVLGTN QGLVHMFKDT GDEVEESWAF IPTELLSNVP VLKQNVANGG HYIYGMDGSP VSYTETDSSG RVNKAWVFMG MRRGGSSYYA LDVTSPDSPS VKWIITPDSS GFAELGQSWS EPIVTTIPGH SGPVLIFGGG YDAPLYDADT VPSTAASKGK AIYIVDADTG ALVHAFTDTG VGGTKMDGLV DSIPNSVAIL DSNNDGDTDR IYATDVGGHV WRIDLAESTR STWSSYKFAD LGGSTAINDR RFFAEPAVAQ TTFSNISEVE VTDGEGATTT TTSYQNVPYD AVVIGSGSRP HPTSVVTSDK FFVLQDRNVV TRSVIGEPVP EVLDMSKLYN VTSTPPVTEA ENISFGTKRG WYFDFTGSGE KSLTAALIID GKVFFTSFLP SVNEVSDLIC SSSGQGRLYV FDLHRGTRSY ENVYYELGER VPDTPQIVVP APETGEDPYI YIIGVGKGEI KDGAPTGTIN VGAGLGVNKI YYHIDE
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