| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1296 |
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| Symbol | |
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| ID | 6115531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1641867 |
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| End bp | 1642847 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 641632779 |
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| Product | type IV pilus assembly protein PilW |
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| Protein accession | YP_001759683 |
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| Protein GI | 170725657 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4966] Tfp pilus assembly protein PilW |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.488119 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGACAGT TAATGCGAAA TAAGGGCATA CAAGTTTCGG GTTTCTCCCT AGTTGAGCTT
ATGGTGGCGA TGGTCATAGG ACTGTTTCTC TCTGCTGGTT TGTTTTCCAT GTTTAATATG
TCGGCAACCA ATGTCACGAC CACGAGTCAG TTTAATCAAT TGCAAGAAAA TGGCCGCATT
GCGCTTGCTT TGGTTGAGAG AGATATAAGT CAACTTGGTT TTATGGGGGA CATGACAGGG
ACTGATTTTG TTCTTGGGGC AAATACACAG ATCCCTGCTG GGGGGGTTCC AAACGATTGT
GTTGGTGCTG GCGCGAATAA TGCCAGTTTA CCCAACAATA CCCCTTCCCA TTTCAGACGT
CTTTGGGGTT ATGAAAGTGG AGTTAGTGGG GATTCACTTG CTTGTTTAAA TAGCGTTAAT
AGTGGCACTG ATGTTCTTCA AATAAAAAGG TTAATTGGAC CTGCAACAAC CACTCCCAAT
TTAAATACGC GATATTACGT GGCTGCAACG CCTAATCAGG CAATCTTTTT TGTGGGAAAC
CCCGCCCCTC CTGTCTTGGC AAATGCTAGA TTTTGGGAGT ATCAACATCA TGTTTACTAC
ATAGCTAATG ATGGTGATAT CCCAGTATTA AGGCGCAGAA CGTTAAGTGT TAATAACGGC
ATGGCCAATG AAGACCAGCT TGTTGAAGGT ATCGAAAATA TCAGAGTGTT ATATGGATTT
GACAATGATG GTGACAATAC CGCTGATAGT TTTATGCCAG TGCAAAATGT GACAAACCTA
ATGTGGGATA ACGAACTGTT CCAACGCCTA GTTGCTCTTA GGATATTTGT CTTAGTTCGT
GCAGTAGAAG CTGACAACAG TTATACCAAT AATACCGATT ATGTTTTAGG TGATAAAACA
GTTGCTGCTA CAGGTGATAA TTTTAGGCGT AAAGTGGTGT CGACTACTGT TGTACTTGAA
AATCCAGTAC TCATCAGATA G
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| Protein sequence | MRQLMRNKGI QVSGFSLVEL MVAMVIGLFL SAGLFSMFNM SATNVTTTSQ FNQLQENGRI
ALALVERDIS QLGFMGDMTG TDFVLGANTQ IPAGGVPNDC VGAGANNASL PNNTPSHFRR
LWGYESGVSG DSLACLNSVN SGTDVLQIKR LIGPATTTPN LNTRYYVAAT PNQAIFFVGN
PAPPVLANAR FWEYQHHVYY IANDGDIPVL RRRTLSVNNG MANEDQLVEG IENIRVLYGF
DNDGDNTADS FMPVQNVTNL MWDNELFQRL VALRIFVLVR AVEADNSYTN NTDYVLGDKT
VAATGDNFRR KVVSTTVVLE NPVLIR
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