| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1294 |
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| Symbol | ispH |
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| ID | 6115529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1640114 |
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| End bp | 1641061 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641632777 |
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| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
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| Protein accession | YP_001759681 |
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| Protein GI | 170725655 |
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| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0761] Penicillin tolerance protein |
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| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.314544 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAAGTAG CCCAGAATCT TCAGATCAAG TTAGCTAACC CTCGGGGCTT TTGCGCCGGA
GTGGATAGAG CTATCAGTAT TGTAGAGCGA GCTTTAGAAC TGTTTCCTGC ACCTATTTAT
GTTCGCCATG AAGTGGTTCA TAACCGCTAT GTGGTGCAAA ACTTGAAAGA TCGCGGTGCG
GTTTTTGTAG AAGAGTTAGA TCAGGTTCCA GATAACAGTA TTGTGATTTT CAGTGCTCAT
GGTGTTTCGC AAGCTGTAAG GAAAGAGGCT AAACATCGTG GTTTGAAGGT GTTTGATGCG
ACCTGTCCAC TTGTTACTAA AGTTCACCTA CAGGTTACCA GAGCTAGTCG CAAAGGGATT
GAGTGCATTC TTATTGGTCA TGCAGGTCAT CCTGAGGTTG AGGGGACCAT GGGGCAATAT
GATAACCCTG AGGGGGGAGT ATTATTAGTT GAGTCCCCAG CGGATGTCGA ATCGTTAGAG
GTTAAAGATC CAAATAACCT CTGTTTTGTT ACTCAAACCA CGCTCTCTAT GGATGATACT
GCCGATGTTA TTGAGGCGCT TCAATCTCGC TTCCCAAGTA TACAGGGGCC TCGTAAAGAT
GATATCTGTT ATGCAACCCA GAACAGACAA GATGCGGTAA GAAATGTCGC TGACGATGTT
GATCTATTTA TTGTTGTTGG TTCTAAAAAT AGCTCTAATT CCAACCGTCT TCGTGAACTT
GCACAGAAGA GAGGCACACA ATCTTATTTA GTCGATAACT CTGATGATAT CGATTCAAGT
TGGTTTGAAG GTGTTACAAA AGTTGCGGTT ACAGCAGGTG CATCTGCACC AGAAGTACTG
GTTCAGCAGG TTATTGATGC AATAGCACAA TTGGCACCTA GCGTGATCAC TGAAGTTGAA
GGGCGTAAAG AGGATACGGT TTTCGCTGTT CCTGCCGAGT TAAGGTGA
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| Protein sequence | MQVAQNLQIK LANPRGFCAG VDRAISIVER ALELFPAPIY VRHEVVHNRY VVQNLKDRGA
VFVEELDQVP DNSIVIFSAH GVSQAVRKEA KHRGLKVFDA TCPLVTKVHL QVTRASRKGI
ECILIGHAGH PEVEGTMGQY DNPEGGVLLV ESPADVESLE VKDPNNLCFV TQTTLSMDDT
ADVIEALQSR FPSIQGPRKD DICYATQNRQ DAVRNVADDV DLFIVVGSKN SSNSNRLREL
AQKRGTQSYL VDNSDDIDSS WFEGVTKVAV TAGASAPEVL VQQVIDAIAQ LAPSVITEVE
GRKEDTVFAV PAELR
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