Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1292 |
Symbol | lspA |
ID | 6115527 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 1639152 |
End bp | 1639682 |
Gene Length | 531 bp |
Protein Length | 176 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 641632775 |
Product | lipoprotein signal peptidase |
Protein accession | YP_001759679 |
Protein GI | 170725653 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0597] Lipoprotein signal peptidase |
TIGRFAM ID | [TIGR00077] lipoprotein signal peptidase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.107992 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAACTA ACTGGAAAGA CAGTGGCTTG CGTTGGTATT GGATGGTTGT ATTGGTGTTT ATTGCCGATC AGCTATCTAA GCAATGGGTA TTAGCTAATT TTGAGTTGCG TGAATCGGTG GAGTTATTGC CTTTCTTTAA CTTCACCTAC CTACGAAACT ATGGGGCTGC TTTTAGTTTT TTAAGTGATG CAGGGGGCTG GCAACGATGG TTCTTTACCT TCGTGGCAGT TGGCTTTAGT ACATTACTGA CCATTTGGTT AAGAAAACAA CCAAGGCAGA TGTGGCGTTT GAATTTGGCT TACACCTTAG TGATAGGTGG CGCGTTAGGT AATTTGATTG ACCGCCTTCA ACATGGCTAT GTGGTCGACT TTTTGCATTT TTATTGGAAC ACAAGCCACT TTCCGGCATT TAATATTGCT GATTCTGCTA TTTGTGTTGG TGCCGCTTTG ATCATTATTG ACTCCATTAT TACCGAGCGA GATGATAAGA AAAAAAAAGC TCAAGAAAAT AATAATACTG CGAAGGAGTA G
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Protein sequence | MPTNWKDSGL RWYWMVVLVF IADQLSKQWV LANFELRESV ELLPFFNFTY LRNYGAAFSF LSDAGGWQRW FFTFVAVGFS TLLTIWLRKQ PRQMWRLNLA YTLVIGGALG NLIDRLQHGY VVDFLHFYWN TSHFPAFNIA DSAICVGAAL IIIDSIITER DDKKKKAQEN NNTAKE
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