Gene Swoo_1292 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1292 
SymbollspA 
ID6115527 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1639152 
End bp1639682 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content41% 
IMG OID641632775 
Productlipoprotein signal peptidase 
Protein accessionYP_001759679 
Protein GI170725653 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0597] Lipoprotein signal peptidase 
TIGRFAM ID[TIGR00077] lipoprotein signal peptidase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.107992 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAACTA ACTGGAAAGA CAGTGGCTTG CGTTGGTATT GGATGGTTGT ATTGGTGTTT 
ATTGCCGATC AGCTATCTAA GCAATGGGTA TTAGCTAATT TTGAGTTGCG TGAATCGGTG
GAGTTATTGC CTTTCTTTAA CTTCACCTAC CTACGAAACT ATGGGGCTGC TTTTAGTTTT
TTAAGTGATG CAGGGGGCTG GCAACGATGG TTCTTTACCT TCGTGGCAGT TGGCTTTAGT
ACATTACTGA CCATTTGGTT AAGAAAACAA CCAAGGCAGA TGTGGCGTTT GAATTTGGCT
TACACCTTAG TGATAGGTGG CGCGTTAGGT AATTTGATTG ACCGCCTTCA ACATGGCTAT
GTGGTCGACT TTTTGCATTT TTATTGGAAC ACAAGCCACT TTCCGGCATT TAATATTGCT
GATTCTGCTA TTTGTGTTGG TGCCGCTTTG ATCATTATTG ACTCCATTAT TACCGAGCGA
GATGATAAGA AAAAAAAAGC TCAAGAAAAT AATAATACTG CGAAGGAGTA G
 
Protein sequence
MPTNWKDSGL RWYWMVVLVF IADQLSKQWV LANFELRESV ELLPFFNFTY LRNYGAAFSF 
LSDAGGWQRW FFTFVAVGFS TLLTIWLRKQ PRQMWRLNLA YTLVIGGALG NLIDRLQHGY
VVDFLHFYWN TSHFPAFNIA DSAICVGAAL IIIDSIITER DDKKKKAQEN NNTAKE