Gene Swoo_1283 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1283 
Symbol 
ID6115518 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1626896 
End bp1628353 
Gene Length1458 bp 
Protein Length485 aa 
Translation table11 
GC content46% 
IMG OID641632766 
Productamino acid carrier protein 
Protein accessionYP_001759670 
Protein GI170725644 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1115] Na+/alanine symporter 
TIGRFAM ID[TIGR00835] amino acid carrier protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000100083 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.240297 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTGAAA AATTAATGAT GTGGATCGAG TCTGCGATCA ACTACACAAA TGGCCTGCTT 
TGGGGCAGTG TGCTTATCTA TGTGTTAGTC GCAGCAGGTG TCCTATTTAC ACTACGCTTA
GGTTTTATCC AGTTTCGTTT ATTCGGACAT GGTGTCAAAC TCGTTATTCA AGGGCGTGAG
AAGATTGACG GGATCTCCTC ATTCCAGGTG TTTTGTACCT CGATGGCGGC GCGAGTCGGT
ACCGGCAATA TGGCTGGTGT GGCTGTTGCT ATCACAGTAG GTGGCGCCGG CGCGATATTT
TGGATGTGGC TTATTGCTAT GCTAGGTATG GCAACGGCCT TTATTGAGTC GACTCTGGCT
CAAGTCTACA AAGTCAAAGA CAGTGAAGGT CAGTACCGTG GTGGTCCCGC TTATTATATG
GAGCGTGGAC TGGGCAAACG CTGGATGGGG ACTATCTTCT CTATACTGCT TATTATTGCT
TTTGGTTTCG CTTTTAACTC TGTGCAAGCC AACACCATGA CAGATGCACT TAATAATGCA
TTTGGTTTCG ATAAAACATT CATTGGTCTT GTTATTGTAC TTGCCTCTGC TTACATTATT
TGTGGTGGAT TAAAGAAGGT TGCCAAGGCA TCTGAACTGA TTGTGCCTGT GATGGCGGTG
GCTTACTTAG CGATAGCCTT ACTGGTACTT GTCACCAATA TCGAGCAGGT TCCTGCAGCA
CTATCACTGA TCGTTAAGAG TGCGTTAGGT TGGGAAGAGG CCGCTGGTGG CGCGATGGGC
GCTATGATGG CCGGTATTGC ACGTGGTTTA TTCTCCAATG AAGCGGGTAT GGGCAGCGCG
GCTAATATTG CGGCATCGGC GACACCGAAC CCTAATCACC CAGCGTCTCA GGGCTTTGTA
CAGATGATCG GTGTTTTTGT TGATACCATC GTTATCTGTA GCTCCTCAGC TGCGATCATC
ATGCTCTCTG GTGTACTCGA TGCACCAAAT GGACAAGAGG GGATAGGATT GCTGCAGTTA
GCGTTAAATA ATGAGCTAGG TGCTTGGTCA TCTTATTTCT TGGCATTTGC GATTATCCTC
TTCTGCTTCT CCTCAATTAT TGCTAACTAC AGCTACGCAG AAAGCAATGT TATGTTTTTA
ACTAAGAGCA AAAAAGTACT CTTCATCTTC CGCGGCCTAG TGTTAGCCAT GGTCATGGTG
GGCTCTGTGG CATCGTTAAG CTTAGTGTGG AACTTTGCTG ATGTGTCGAT GGGATTGATG
GCTCTGGTTA ATATCGCTGC GATTGTGATG CTCTCTAAGG TGGCCTATTC CGTGATTAAA
GACTATGAGC TTCAGCTTAA ATCTGGCGTA ACACCAACTT TTGATAGCAC AAAGTTTCCC
GAAATCGATA ATTTAGAGGG CGGGATCTGG GTGAACAAAA ATCAAAAAAC GGCTAAAAGT
TCTGCAGAAA CGAATTAA
 
Protein sequence
MFEKLMMWIE SAINYTNGLL WGSVLIYVLV AAGVLFTLRL GFIQFRLFGH GVKLVIQGRE 
KIDGISSFQV FCTSMAARVG TGNMAGVAVA ITVGGAGAIF WMWLIAMLGM ATAFIESTLA
QVYKVKDSEG QYRGGPAYYM ERGLGKRWMG TIFSILLIIA FGFAFNSVQA NTMTDALNNA
FGFDKTFIGL VIVLASAYII CGGLKKVAKA SELIVPVMAV AYLAIALLVL VTNIEQVPAA
LSLIVKSALG WEEAAGGAMG AMMAGIARGL FSNEAGMGSA ANIAASATPN PNHPASQGFV
QMIGVFVDTI VICSSSAAII MLSGVLDAPN GQEGIGLLQL ALNNELGAWS SYFLAFAIIL
FCFSSIIANY SYAESNVMFL TKSKKVLFIF RGLVLAMVMV GSVASLSLVW NFADVSMGLM
ALVNIAAIVM LSKVAYSVIK DYELQLKSGV TPTFDSTKFP EIDNLEGGIW VNKNQKTAKS
SAETN