| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1282 |
|---|
| Symbol | |
|---|
| ID | 6115517 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 1624098 |
|---|
| End bp | 1626464 |
|---|
| Gene Length | 2367 bp |
|---|
| Protein Length | 788 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641632765 |
|---|
| Product | putative phosphoketolase |
|---|
| Protein accession | YP_001759669 |
|---|
| Protein GI | 170725643 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3957] Phosphoketolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0002253 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0247047 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACAAC AGCAAGAGAT CAGCGCACTA AAGAAATTTG TTCGAGCTAC CAACTTTCTA
GCCACTTCGC AAATTTACCT CAAGCAGAAC GTACTACATA AACGTTCGCT TACTCACTCA
GATATTAAAC CTAGACTGCT TGGCCACTGG GGCACCTGCC CAGGTATCAA CTTTGTTTAT
GCCAACGTCA ACCGCCTTAT CGTCAAGAAC CAGCGCTCCT TTGTCTATTT AGTCGGCCCT
GGCCATGGTT TTCCTGCCGT ACAAGCTAAC CTGTTTATGG AGGGGTCTCT TAGCCACTTC
TACCCAGAAA ACATTCCATA CAACGAAACT GGCATTGAAG ATATCTGTAA AAAGTTCTCC
GCCGCTTACG GCTACCCATC CCATGCAAAC CCTGAAGCAC CAGGCCAAAT TTTAGAGGGT
GGCGAGCTAG GTTATTCGCT TTCTGTTGCC TGGGGCGCAG TACTGGATAA TCCTGATTTA
ATTGCAGCAT GTCTTGTGGG TGATGGTGAA TCAGAAACAG GTCCACTCGC AGCATCTTGG
TATGCTAACC GCTTAGTTGA CCCTGCAACC AATGGCGCCG TACTGCCTAT CGTCCATATT
AATGGTTATA AGATCTCAGG CCCAACCCGT ATGGGACGTA TGAGCCACGA AGAGCTAGAT
CTTGAGTTCC GCGGCCTTGG CTACCATCCA ATCATCGTTG ACGATGAGCT CGATGAAGAT
GTCTATGTGC AGATGACGAA AGCCATGGAC ACCTCCTATG AGATGATAAC CGCCATTCAA
ACCCGTGCAC GCAGTGGTGA AGATGTTGTC AAGCCTCGCT GGCCAGTGAT TTTGATGCGT
ACAGCAAAAG GCTGGACAGG TACCTCACAG TATAATGGTA AGAAGCTAGA GGGTAACTGC
GAATCTCACC AAGTTATCGT TAATAAGTGC GCCACAGATA AAGGCCACTT AGATGCTCTC
GATACTTGGC TTGCAAGCTA TAACTTTAAT GAGCTCTACT CAATCAACGA ACAAGGCCAG
CTAATTTTCG ATAAAGAGAT CCAATCTCTC ATTCCACCAG CAGAGCTTTG CTGCGGCCGT
CAACACTTAA GCTATGGTGG CGAAGTCGTT CGTGCCCTGT CCAAACCAGA CCTTGAAAAG
CTCTCTTATG GTCCGGAAAC ACCAAGAGGA CAGCGGGGGC TCTCTATGTA TAAGATGGGT
GAGTGGATGC GTGATGCATT TAAACTCAAC CGTGACCAAC GTAACCTACG TATCTTCAGC
CCTGATGAGA CTTACTCGAA TCAACTTCAA GCAGTATTTG AAGAAACAGA CCGCGCATGG
CAGTGGCCTA TCGAGGAGTG GGATGAAGAC ATGGCCCGTG ATGGACGTGT TATCGAGCTA
CTTTCAGAGA ACTTACTCTT CGGTATGATG CATGGCTACA CTGTGACAGG TCGCCACGCG
ATGTTCCCAA CTTATGAGTC ATTCTCACAA GTTGTCTCAT CAATGGCCGA TCAGTACTGT
AAGTATGTCT ATGCCAGCCA AGGGGTACAC TTCCGTAAGC CAGTACCTGC CTGTAACGTG
GTGCTATCAT CGCTCCTTGA GCGTCAAGAC CACAACGGTT ACTCGCATCA AAACCCGTCA
TTCCTCGGCG CAATGTTAGA GAAGCACCCT AAGATCATCT CAGCTTACCT ACCAGCCGAC
GGTAACAGCA CTTTGGTTTA TACAGAGCGT GCATATGAAG ACAGAGACAA GCTCAACATC
TTAGTTGCGG GTAAGAAAGA CTTGCCTCAG TGGCTAACAC TTGATGAAGC ACGCCAACAA
GCAAAAGATG GCGTCATGGT TTGGGATTTT GCCTCCGATG AAAACCCAGA TGTTGTACTC
GTTGGTTGTG GTGATTACGT CACCCAAGAA GCGATGGCAT CACTGGTACT CATACGTGAG
TTACTGCCAA GGGTGCGTAT TCGCTTTGTT AGCGTCACCG AGCTTACCAG CAGCGGCTTA
GGTAGCTTGG ATTTCCAAAG CAAGCCTTGG TTAATGGATG AGGTATTTAC CGCCGATAAA
GGTGTGGTAT TTAACTATCA CGGTTACCCA AATACCATTA AGAAGTTGGT ATTTGATTAT
AAAGGCAGTG ATAGATTCAG AATCAAAGGT TACGAAGAGG AAGGTTCAAC AACAACGCCA
TTTGATATGG GCGTTCGTAA CGGTACTTCT CGTTACCACT TGGTTATTGA TATGGCTTAC
AAGTTGTTCC AGCAAGGCGT CATCGACGAA ACCCAACACG TGGCCATTAC CACAGACATG
CTTCAGCGTC TCGTGGACCA CAGAAACTAT ATCAAAGCTA ACGGTGTTGA CCCTATTAGT
CTTGAAAATT GGGTCTGGAC TCGCTAA
|
|---|
| Protein sequence | MSQQQEISAL KKFVRATNFL ATSQIYLKQN VLHKRSLTHS DIKPRLLGHW GTCPGINFVY
ANVNRLIVKN QRSFVYLVGP GHGFPAVQAN LFMEGSLSHF YPENIPYNET GIEDICKKFS
AAYGYPSHAN PEAPGQILEG GELGYSLSVA WGAVLDNPDL IAACLVGDGE SETGPLAASW
YANRLVDPAT NGAVLPIVHI NGYKISGPTR MGRMSHEELD LEFRGLGYHP IIVDDELDED
VYVQMTKAMD TSYEMITAIQ TRARSGEDVV KPRWPVILMR TAKGWTGTSQ YNGKKLEGNC
ESHQVIVNKC ATDKGHLDAL DTWLASYNFN ELYSINEQGQ LIFDKEIQSL IPPAELCCGR
QHLSYGGEVV RALSKPDLEK LSYGPETPRG QRGLSMYKMG EWMRDAFKLN RDQRNLRIFS
PDETYSNQLQ AVFEETDRAW QWPIEEWDED MARDGRVIEL LSENLLFGMM HGYTVTGRHA
MFPTYESFSQ VVSSMADQYC KYVYASQGVH FRKPVPACNV VLSSLLERQD HNGYSHQNPS
FLGAMLEKHP KIISAYLPAD GNSTLVYTER AYEDRDKLNI LVAGKKDLPQ WLTLDEARQQ
AKDGVMVWDF ASDENPDVVL VGCGDYVTQE AMASLVLIRE LLPRVRIRFV SVTELTSSGL
GSLDFQSKPW LMDEVFTADK GVVFNYHGYP NTIKKLVFDY KGSDRFRIKG YEEEGSTTTP
FDMGVRNGTS RYHLVIDMAY KLFQQGVIDE TQHVAITTDM LQRLVDHRNY IKANGVDPIS
LENWVWTR
|
|---|
| |