Gene Swoo_1274 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1274 
Symbol 
ID6115509 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1614227 
End bp1615096 
Gene Length870 bp 
Protein Length289 aa 
Translation table11 
GC content45% 
IMG OID641632757 
Productapurinic endonuclease Apn1 
Protein accessionYP_001759661 
Protein GI170725635 
COG category[L] Replication, recombination and repair 
COG ID[COG0648] Endonuclease IV 
TIGRFAM ID[TIGR00587] apurinic endonuclease (APN1) 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0481447 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTTTGA GTCGTTGGGT TGGCGCCCAT GTCAGCGCAT CAGGTGGGAT AGCTAACGCC 
CCCATTAATG CCAAAAAAAT AGGAGCAGAT GCATTTGCGC TGTTCACAAA AAACCAAAGG
AGATGGCAAG CTGCGCCCCT ATGCCCACAA CAGGTAATAG ATTTTAAGCA AAACTGCCAA
GAAGCAAACA TCTTAAGTGA AGCTATTTTA CCCCATGATA GCTACTTGAT TAACCTAGGG
CACCCGGATC AAGAGCAACT TGAAAAATCC AGATTGGCAT TTTTCGACGA GATGGAACGT
TGTGAGCAGA TGGGGCTATC ACTACTTAAC TTCCACCCAG GAAGCCATTT AAGAAAGATA
GAGATTGATG AATGCCTATC TAGGATCAGT CAGTCGATAA ATATGGCGTT AGACAAAACA
CAGCATGTCA CCGCTGTGAT TGAAAATACC GCAGGACAAG GCTCAAACCT AGGTCATAGT
TTTGAGCAGC TCGCTCAGAT CATCGATGGC GTAGAGGATA AATCTCGCGT TGGGGTTTGC
ATAGATACCT GCCACATGTT TGCAGCAGGT TACGACATCA GTACCTATCA GGCCTGTGAG
GAGAGCTTCG CCCTATTTGA CCGAATAGTA GGCGATCGCT ACCTAAAAGC CATGCACCTC
AATGACAGTA AAACGCCACT AAATAGCCGC GTTGACAGAC ACGAGTCTTT AGGTCTAGGC
CACATTGGAA AAGAGGGGTT TGAATTTATT ATGAATCATC CCGCCACTGA GAATATTCCT
ATGGTACTAG AAACCATCAA CTCTGACATT TGGGTAGATG AGATAAATTG GCTACGCAGT
TTGACTAAAA AGCACATCGC AGTGGATTAG
 
Protein sequence
MSLSRWVGAH VSASGGIANA PINAKKIGAD AFALFTKNQR RWQAAPLCPQ QVIDFKQNCQ 
EANILSEAIL PHDSYLINLG HPDQEQLEKS RLAFFDEMER CEQMGLSLLN FHPGSHLRKI
EIDECLSRIS QSINMALDKT QHVTAVIENT AGQGSNLGHS FEQLAQIIDG VEDKSRVGVC
IDTCHMFAAG YDISTYQACE ESFALFDRIV GDRYLKAMHL NDSKTPLNSR VDRHESLGLG
HIGKEGFEFI MNHPATENIP MVLETINSDI WVDEINWLRS LTKKHIAVD