Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1274 |
Symbol | |
ID | 6115509 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 1614227 |
End bp | 1615096 |
Gene Length | 870 bp |
Protein Length | 289 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641632757 |
Product | apurinic endonuclease Apn1 |
Protein accession | YP_001759661 |
Protein GI | 170725635 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0648] Endonuclease IV |
TIGRFAM ID | [TIGR00587] apurinic endonuclease (APN1) |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0481447 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTTGA GTCGTTGGGT TGGCGCCCAT GTCAGCGCAT CAGGTGGGAT AGCTAACGCC CCCATTAATG CCAAAAAAAT AGGAGCAGAT GCATTTGCGC TGTTCACAAA AAACCAAAGG AGATGGCAAG CTGCGCCCCT ATGCCCACAA CAGGTAATAG ATTTTAAGCA AAACTGCCAA GAAGCAAACA TCTTAAGTGA AGCTATTTTA CCCCATGATA GCTACTTGAT TAACCTAGGG CACCCGGATC AAGAGCAACT TGAAAAATCC AGATTGGCAT TTTTCGACGA GATGGAACGT TGTGAGCAGA TGGGGCTATC ACTACTTAAC TTCCACCCAG GAAGCCATTT AAGAAAGATA GAGATTGATG AATGCCTATC TAGGATCAGT CAGTCGATAA ATATGGCGTT AGACAAAACA CAGCATGTCA CCGCTGTGAT TGAAAATACC GCAGGACAAG GCTCAAACCT AGGTCATAGT TTTGAGCAGC TCGCTCAGAT CATCGATGGC GTAGAGGATA AATCTCGCGT TGGGGTTTGC ATAGATACCT GCCACATGTT TGCAGCAGGT TACGACATCA GTACCTATCA GGCCTGTGAG GAGAGCTTCG CCCTATTTGA CCGAATAGTA GGCGATCGCT ACCTAAAAGC CATGCACCTC AATGACAGTA AAACGCCACT AAATAGCCGC GTTGACAGAC ACGAGTCTTT AGGTCTAGGC CACATTGGAA AAGAGGGGTT TGAATTTATT ATGAATCATC CCGCCACTGA GAATATTCCT ATGGTACTAG AAACCATCAA CTCTGACATT TGGGTAGATG AGATAAATTG GCTACGCAGT TTGACTAAAA AGCACATCGC AGTGGATTAG
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Protein sequence | MSLSRWVGAH VSASGGIANA PINAKKIGAD AFALFTKNQR RWQAAPLCPQ QVIDFKQNCQ EANILSEAIL PHDSYLINLG HPDQEQLEKS RLAFFDEMER CEQMGLSLLN FHPGSHLRKI EIDECLSRIS QSINMALDKT QHVTAVIENT AGQGSNLGHS FEQLAQIIDG VEDKSRVGVC IDTCHMFAAG YDISTYQACE ESFALFDRIV GDRYLKAMHL NDSKTPLNSR VDRHESLGLG HIGKEGFEFI MNHPATENIP MVLETINSDI WVDEINWLRS LTKKHIAVD
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