| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1237 |
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| Symbol | |
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| ID | 6115472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | + |
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| Start bp | 1575850 |
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| End bp | 1576428 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 641632720 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_001759624 |
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| Protein GI | 170725598 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000109114 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000153595 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTGGAC AAATAAGTGA TCAACAGTTA GTTGAACGGG TACAGCAGGG AGATAAGAAC
GCCTTTAACC TCTTAGTGCA GAAGTATCAA AATAAGGTCA TGAGCCTGAT CTCACGTTAC
GTACGTAATC AGGCTGATGT TGGAGATGTC GCTCAGGAAG CTTTTATTAA AGCCTACAGA
GCACTGCCAA ACTTCAGAGG CGAAAGTGCA TTCTATACTT GGTTGTATCG GATTGCGGTT
AATACCGCGA AAAACCATTT AGTGGCACAG GGGCGACGCG CTCCTGCAAA TGATATCGAT
GCTGAAGAAG CTGAGTATTA TGATGGTAGC GATGCGTTAA AGGAGTTTGC ATCTCCGGAG
CGCTTAATGA TGTCAGATCA GATCCAGAAA GTGGTCTTTG ACACATTAGA TACCTTGCCA
GAAGAGTTAA AGATGGCGAT TTCGTTGCGT GAACTCGATG GGATGAGTTA CGAAGAGATA
GCTAATGTAA TGGATTGTCC AGTGGGAACA GTAAGATCGC GTATCTTCAG AGCTCGTGAG
GCGATCGATA AAAAGCTCCA ACCTTTGTTA GAGCAGTAA
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| Protein sequence | MSGQISDQQL VERVQQGDKN AFNLLVQKYQ NKVMSLISRY VRNQADVGDV AQEAFIKAYR
ALPNFRGESA FYTWLYRIAV NTAKNHLVAQ GRRAPANDID AEEAEYYDGS DALKEFASPE
RLMMSDQIQK VVFDTLDTLP EELKMAISLR ELDGMSYEEI ANVMDCPVGT VRSRIFRARE
AIDKKLQPLL EQ
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