Gene Swoo_1236 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwoo_1236 
Symbol 
ID6115471 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella woodyi ATCC 51908 
KingdomBacteria 
Replicon accessionNC_010506 
Strand
Start bp1574039 
End bp1575649 
Gene Length1611 bp 
Protein Length536 aa 
Translation table11 
GC content48% 
IMG OID641632719 
ProductL-aspartate oxidase 
Protein accessionYP_001759623 
Protein GI170725597 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0029] Aspartate oxidase 
TIGRFAM ID[TIGR00551] L-aspartate oxidase 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.305386 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000186096 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAACAAG TAGTTGAACA CCAATCTGAC GTTTTGGTTA TTGGCAGTGG CGCTGCAGGC 
CTAACATTAG CGTTGCATCT TGCTGAAAAG TCACAAGTAA TATTATTATC AAAGGGTCCT
CTGAGTGAAG GCTCGACCTA CTATGCCCAG GGCGGCATCG CCTCGGTATT TGATGAAGAT
GATACGATAG AATCCCACGT TGCCGATACT TTAGTCGCTG GCGCAGGTTT ATGTGATGAG
TCAGTGGTCA CTTTTACCGC AAAAAATGCA AAAAGCTCCA TGGAGTGGCT AATAAAGTGT
GGCGTTGCTT TTGATAAAGA GGAGAGCTTC GAAGGCGATG CTAGCCAAGC TCCCTACCAC
CTCACACGGG AGGGCGGACA TAGTCATAGA CGGATCCTCC ATGCCGCCGA TGCCACGGGA
AAAGAGGTTC AAGTCACTCT GCAAGATAGA GCTAAGGCTC ACCCAAATAT TCGTGTTCTC
GAGCGCTATA ACGCCATTGA CCTTATTACC TCACGTAAAT TAAACCTCTC AGGTAATCGA
GTACTCGGTG CTTATATCTG GAACAGAGAT GAGGAGCATG TAGAGACAGT TAAGGCTCGT
TTTGTTGCAC TAGCCACTGG CGGCAGCTCT AAGGTGTATC AATATACCTC CAATCCAGAT
ATCGCCTCTG GTGATGGCAT CGCGATGGCA TGGCGATCTG GGTGTCGTGT GGCCAATATG
GAGTTTAATC AGTTCCATCC CACTTGCCTC TATCATGCAG ATGCCAGAAA TTTCCTACTG
ACCGAAGCGT TACGTGGTGA AGGCGCTTTT CTTCGTCGCC CTGACGGTAG CCGCTTTATG
CCAGACTTTG ATGAGCGTGC AGAGCTGGCC CCCCGAGATA TTGTCGCCCG CGCCATCGAT
TATGAGATGA AACGCTTAGG TTCTGACTGT GTTTACTTAG ACATTAGCCA TAAACCCGCT
GACTTTGTCA TTAAGCACTT CCCGACAATT CATAAGCGTT GCCTCGAATT CGGTATTGAT
ATCACCACAG ATCCTATCCC TGTTGTGCCT GCTGCTCACT ATACTTGTGG CGGCGTGATG
ACTGATATCC ATGGGCAAAC CGACCTGAAC GGCTTATATG CTATCGGTGA GGTCGCATAC
ACAGGCTTGC ACGGTGCCAA CCGTTTGGCC AGTAATTCTC TACTTGAGTG CTTAGTATTT
GCTCGTGCAG CAGGTGAGGA TATTGAAAGC CAACTGCATA AGATCCCTAT GCCAGGCCAC
ATTCCCGCTT GGGATGAAAG TCAGGTATCC AACTCAGATG AAGAGGTTGT GATTGCCCAT
AACTGGCATG AGCTCAGGCT GTTTATGTGG GATTATGTCG GTATTGTACG CTCAGATAAA
CGTCTTGAAC GGGCACTTCG TCGATGCGCC ATGTTGCAGC AGGAGATCCA AGAGTATTAC
AGTAACTTCC GCGTCAGTAA TAATCTACTT GAGCTAAGAA ACTTAGTTCA GGTAGCAGAG
CTTATCATTC GCTGTGCAAT GGAACGTAAG GAGAGCCGAG GGCTCCACTA CAACATAGAT
CATCCACAGC AGTTGGATAA ACCGACCCCA ACCATTTTAC AACCTGATTA G
 
Protein sequence
MKQVVEHQSD VLVIGSGAAG LTLALHLAEK SQVILLSKGP LSEGSTYYAQ GGIASVFDED 
DTIESHVADT LVAGAGLCDE SVVTFTAKNA KSSMEWLIKC GVAFDKEESF EGDASQAPYH
LTREGGHSHR RILHAADATG KEVQVTLQDR AKAHPNIRVL ERYNAIDLIT SRKLNLSGNR
VLGAYIWNRD EEHVETVKAR FVALATGGSS KVYQYTSNPD IASGDGIAMA WRSGCRVANM
EFNQFHPTCL YHADARNFLL TEALRGEGAF LRRPDGSRFM PDFDERAELA PRDIVARAID
YEMKRLGSDC VYLDISHKPA DFVIKHFPTI HKRCLEFGID ITTDPIPVVP AAHYTCGGVM
TDIHGQTDLN GLYAIGEVAY TGLHGANRLA SNSLLECLVF ARAAGEDIES QLHKIPMPGH
IPAWDESQVS NSDEEVVIAH NWHELRLFMW DYVGIVRSDK RLERALRRCA MLQQEIQEYY
SNFRVSNNLL ELRNLVQVAE LIIRCAMERK ESRGLHYNID HPQQLDKPTP TILQPD