| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1221 |
|---|
| Symbol | gltB |
|---|
| ID | 6115456 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 1555116 |
|---|
| End bp | 1559564 |
|---|
| Gene Length | 4449 bp |
|---|
| Protein Length | 1482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641632705 |
|---|
| Product | glutamate synthase subunit alpha |
|---|
| Protein accession | YP_001759609 |
|---|
| Protein GI | 170725583 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0069] Glutamate synthase domain 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.120556 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTGT ATCACCCCAG TTTCGAGAGA GATAATTGTG GTTTTGGCCT GATAGCCCAG
ATGGATGGTG AGCCTAGTCA TCGCATCGTA AGAACTGCAA TTCACGGCCT AGACCGTATG
AAGCATCGTG GTGGAATCGC AGCAGATGGC CGTACAGGCG ACGGCTGTGG ATTACTAATG
CAGCTTCCCG TTAAGTTTTT TGAAGCCGTA GCAGCAGAAA ACGATTGGCA CCTTAGTCGT
AAGTTTGCCG TTGGTATGCT TTTCCTCAAC CAAAACGACC AACTAGCAGA GCAAACTAAA
CTCCTGTTAG AGCGTGAGCT TGAAAAAGAG ACCTTAAGCG TTGCAGGTTG GAGAAAAGTC
CCAGTCAATG CCGATGTACT TGGTGATATA GGTAAAGCAA GCCAGCCCCA GATCTATCAA
GTGCTAATTA ATTCCCCTAT TGGATGGCGA GAGAAAGATC TTGAGCGTCG CCTCTATATG
GCAAGACGCC GCTTAGAGCA GCAACTTCAT CATGATAAAG ATTTTTATGT TGCCAGCTTA
TCAGGCCAAG TCATCGTCTA TAAAGGCCTG ATGATGCCTG CGGATCTCCC AGAGTTTTAC
CTTGATCTAG CCGATATCAG ACTGCAAAGC TCAATCTGTC TATTTCATCA AAGATTCTCA
ACCAACACCT CACCTAAATG GCCCCTCGCA CAGCCTTTTA GGTACCTTGC CCATAACGGT
GAAATTAATA CCATTACCTG TAATAGGCAG TGGGCACGTG CTCGTGCTTA TAAATTTAAT
GCTCCGCTAT TACCAGATCT GCAACAAGCA GCTCCCTTTG TAAACGAAAC AGGCTCTGAC
TCCTCCTCAC TGGATAACAT GCTTGAGATG CTTCTTGCTG GCGGCATGGA TCTGTACCGC
GCGATGCGTT TGTTGATTCC ACCAGCATGG CAAAGTAACC CAGAGATGGA TGAGGAGTTA
AAGGCCTTCT ACGACTTCAA CTCCATGCAT ATGGAGCCAT GGGATGGGCC TGCGGGTATC
GTTATGACCA ATGGTCGTCA CGCGGCATGT GCCGTAGACC GTAATGGTCT GCGCCCGTCA
CGCTATGTGA TCACCAAAGA CAGAATCCTC ACCTTGGCAT CTGAGGTGGG AATTTGGGAT
TATGCCCCCG ACGAAGTTGT CGAGAAAGGC CGTGTCGGAC CCGGTGAGCT ATTAGTACTC
GATACCCTTA ACGGTCAGCT CTACTCATCA TTTGAGATTG ATAACGATCT TAAACGTCGT
CACCCCTATA AAGCATGGAT GGCAAAAAAC AGTCAAACCT TAACCCCGGC CGAAGAGACC
CCGATTGCCG AGCAAGGGAT TTGTGAATTT TCACCCGAGC AATTGTTGCA ATACCAGAAG
CATTTTGGTT ACTCACGTGA AGAGCTAGAA CAGGTTATTT GGGTGTTGGC CCAAAAGGGC
GAAGAGGCAA CTGGCTCTAT GGGTGATGAT ACCCCTATGG CTGTGCTCTC TAAAAAATCA
CGCACTGTCT ATGACTACTT CAGGCAGAAG TTTGCTCAAG TCACCAATCC TCCTATCGAT
CCATTAAGAG AGAAGCATGT TATGTCACTC TCTACCTGTG TCGGTAGAGA GCAGAACCTG
TTCAATGAGA CCACAGGTCA CGCCTACCGA GTGATGTTTA ACTCACCAGT GCTGCTATAC
AGCGACTTTA ATCAGTTAAT GGCACTGGAT TCGACCTACT ACCGCGCTAA TAGAGTCGAT
CTGAACTACG ACATCACAGA GGGACTCGAA CAGGCTATTA TTCGGATCTG TGATGAGTCT
GAGCGTTTAG CGCGTACAGG TACTACCCTG CTTATCTTGT CAGATCGTGC AACGGACAAA
TCTAAGCAGA TTATCCCAGC TGCCATGGCA GTAGGAGCGG TGCAGAAGAT ACTGGTTGAT
AAGAGCCTAC GTTGTGATAC TAACATCATA GTAGAGACAG GCTCGGCTCG TGATCCACAC
CACTTCGCCG TTTTACTAGG CTTTGGCGCA ACCGCCATAT ACCCATACCT AGCATACGAG
AGTATCTCGG CACTGGCTAA GCTTAATAAT GCCCCTAAAA ACTATCAGTT GATGCTGAAC
TTCCGCCAAG GCATAGATAA AGGCTTGAGG AAGATCATGT CGAAGATGGG GATCAGTACG
GTCTCCTCAT ACCGCTGTAG TCAGCAGTTT GAAGCGGTTG GCCTTGCTAG CAAAGTCGTT
GTTCTCTGTT TTAATGGGGT AGTAAGCCGC ATTGAAGGCG CTAACTTTGG CGAGCTTGAG
CAAGATCAGG TTGAGCTGCA TAAGCTTGCC TTCCGTGCCC ACCAGCCTCT ATCTCAGGGG
GGATTACTTA AATATGTTGA AGGCGGTGAG TACCACTGTT TTAACCCAGA TGTGGTTAAT
ACATTGCAAG CCAGCTTAAA AGATCGTGAC TACCCAAGTT ATAAGAAGTT TACTGAGCTG
GTTGATAACC GCCCGATCGC GACACTGCGC GATCTTATCG CCATTAAAGG TGAACTCGAG
GCTGTTGAAC TCGATAAGGT AGAATCTGCC GATACTCTCT ACCCAAGGTT TGACAGCGCC
GCAATGAGTA TTGGCGCCCT TAGCCCTGAA GCCCATGAGG CATTAGCGGT AGCGATGAAC
CGACTCGGTG GTCGTTCAAA CTCTGGTGAA GGCGGAGAAG ATCCAAGCCG TTTCAACTCA
GAGCGCAACT CGAAAATTAA ACAGATAGCC TCAGGACGCT TCGGTGTCAC GGCTCACTAC
CTGATGAATG CAGAAGTACT GCAGATCAAG GTCGCACAAG GGGCTAAGCC AGGTGAAGGT
GGTCAGCTTC CTGGTCACAA GGTGAGTGTT GAGATAGCAG GCCTGCGTAA TGCAAGACCT
GGAGTTACCC TGATCTCGCC TCCTCCCCAT CATGATATCT ACTCGATTGA AGATCTCGCT
CAGCTCATTT TTGACCTTAA GCAGATCAAT CCAAGCGCCA TGGTTTCGGT CAAGCTCGTC
TCTGAGCCAG GTGTAGGGAC TATCGCAACC GGTGTGGCTA AAGCCTACGC CGATATGATC
ACCATCTCTG GTTATGATGG CGGCACAGGT GCCAGCCCAA TAACCTCGGT CAAATATGCT
GGTAGCCCAT GGGAGCTAGG CCTTGCTGAA GTGCATCAAT CTCTGGTTGA AAATGGTCTT
AGACATAAGA TACGACTGCA GGTAGATGGC GGACTGAAAA CCGGCCAAGA TGTACTAAAA
GCGGCCCTGC TCGGCGCGGA AAGCTTCGGT TTCGGTACTG TACCTATGAT TGCATTAGGG
TGTAAATACC TGCGTATCTG CCACCTGAAT AACTGCGCAA CGGGCGTTGC TACTCAGAAT
ACTAAGTTGA GAAATGAGCA CTACCACGGT TTACCTGAGC GTGTCATGAC CTACTTTGAG
TTTGTCGCAA GAGAGATCCG CGAAGGGATG GCAGCATTAG GGGTTACCCA GTTTGAAGAC
CTTATCGGTC GCAGCGAGTG GTTAACCACG CTAGAGGGCA AAACATCTAA ACAGCAAGGA
TTAGATCTTA ACCCTATCCT CTACACGCCT AAAATACCTG AAGGCAGCGC CAAAACATGG
CGTGAGCTCA ATCACACTGA AGATAAAGGT CGGTTGAACC AAGTCGTTTT AGACAAGGTC
AAAGATGCCG TTATCGCTGG TGAATCGATT CAAGCAAGAT TTGATATCAA TAATACCGAC
CGCTCAGTTG GCGCTTCACT CTCAGGATTT ATTGCCAAAA CAGTGGGTAA AGAGGGCGCT
AAACAGCCAA TACAGTTAAG GTTTAATGGT AGCGCTGGCC AGAGCTTTGG TGTCTGGAAC
TCACCAGGAT TAGAGCTCAC CCTGTGTGGC GACGGTAACG ACTATGTAGG CAAAGGGATG
TCAGGTGGCA AGATCACCAT ACACCCACCA CTAGGAAGTA CGTTCCAGAG TGAACGTTCG
GCGATTATCG GTAACACCTG CCTCTATGGC GCCTCTGGTG GTAAGTTGTT TGCAGCTGGA
ACCGCAGGAG AGCGATTTGC CGTGCGTAAC TCAGGCGCGA CTGCTGTGGT TGAAGGCTTA
GGTGACAATG GTTGTGAATA TATGACTGGC GGTATCGTAC TTGTTCTAGG AAGAACCGGC
GTGAACTTCG CTGCGGGTAT GACAGGCGGA TTTGCCTATG TGTTCGACAG ACTTGGCCGC
TTCCACCGCC GAGTGAACAC TGAGCTGGTC GACACACAAA AAGTCAGTTC ACCGATACAT
CAGCACCACT TAAGAGGCTT AATAGAGGAG CATTTAGCGG AAACTGGTAG CGAGCATGCC
AAGATGCTAC TGGCTGACTT TGAAAACTGG ATCGAATGCT TCGTCTTAGT GAAACCTAAA
AATGTGCCGG TTTCAGATCT ATTAAAACTT GAGCAATCAC AACCAGAATT AGCTGTAGTA
GCGGGGTAA
|
|---|
| Protein sequence | MSLYHPSFER DNCGFGLIAQ MDGEPSHRIV RTAIHGLDRM KHRGGIAADG RTGDGCGLLM
QLPVKFFEAV AAENDWHLSR KFAVGMLFLN QNDQLAEQTK LLLERELEKE TLSVAGWRKV
PVNADVLGDI GKASQPQIYQ VLINSPIGWR EKDLERRLYM ARRRLEQQLH HDKDFYVASL
SGQVIVYKGL MMPADLPEFY LDLADIRLQS SICLFHQRFS TNTSPKWPLA QPFRYLAHNG
EINTITCNRQ WARARAYKFN APLLPDLQQA APFVNETGSD SSSLDNMLEM LLAGGMDLYR
AMRLLIPPAW QSNPEMDEEL KAFYDFNSMH MEPWDGPAGI VMTNGRHAAC AVDRNGLRPS
RYVITKDRIL TLASEVGIWD YAPDEVVEKG RVGPGELLVL DTLNGQLYSS FEIDNDLKRR
HPYKAWMAKN SQTLTPAEET PIAEQGICEF SPEQLLQYQK HFGYSREELE QVIWVLAQKG
EEATGSMGDD TPMAVLSKKS RTVYDYFRQK FAQVTNPPID PLREKHVMSL STCVGREQNL
FNETTGHAYR VMFNSPVLLY SDFNQLMALD STYYRANRVD LNYDITEGLE QAIIRICDES
ERLARTGTTL LILSDRATDK SKQIIPAAMA VGAVQKILVD KSLRCDTNII VETGSARDPH
HFAVLLGFGA TAIYPYLAYE SISALAKLNN APKNYQLMLN FRQGIDKGLR KIMSKMGIST
VSSYRCSQQF EAVGLASKVV VLCFNGVVSR IEGANFGELE QDQVELHKLA FRAHQPLSQG
GLLKYVEGGE YHCFNPDVVN TLQASLKDRD YPSYKKFTEL VDNRPIATLR DLIAIKGELE
AVELDKVESA DTLYPRFDSA AMSIGALSPE AHEALAVAMN RLGGRSNSGE GGEDPSRFNS
ERNSKIKQIA SGRFGVTAHY LMNAEVLQIK VAQGAKPGEG GQLPGHKVSV EIAGLRNARP
GVTLISPPPH HDIYSIEDLA QLIFDLKQIN PSAMVSVKLV SEPGVGTIAT GVAKAYADMI
TISGYDGGTG ASPITSVKYA GSPWELGLAE VHQSLVENGL RHKIRLQVDG GLKTGQDVLK
AALLGAESFG FGTVPMIALG CKYLRICHLN NCATGVATQN TKLRNEHYHG LPERVMTYFE
FVAREIREGM AALGVTQFED LIGRSEWLTT LEGKTSKQQG LDLNPILYTP KIPEGSAKTW
RELNHTEDKG RLNQVVLDKV KDAVIAGESI QARFDINNTD RSVGASLSGF IAKTVGKEGA
KQPIQLRFNG SAGQSFGVWN SPGLELTLCG DGNDYVGKGM SGGKITIHPP LGSTFQSERS
AIIGNTCLYG ASGGKLFAAG TAGERFAVRN SGATAVVEGL GDNGCEYMTG GIVLVLGRTG
VNFAAGMTGG FAYVFDRLGR FHRRVNTELV DTQKVSSPIH QHHLRGLIEE HLAETGSEHA
KMLLADFENW IECFVLVKPK NVPVSDLLKL EQSQPELAVV AG
|
|---|
| |