| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1220 |
|---|
| Symbol | gltD |
|---|
| ID | 6115455 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 1553700 |
|---|
| End bp | 1555109 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641632704 |
|---|
| Product | glutamate synthase subunit beta |
|---|
| Protein accession | YP_001759608 |
|---|
| Protein GI | 170725582 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01318] glutamate synthase small subunit family protein, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0481447 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAATG ATTTCCAATT TATAGAAGTT GACCGCAAAG ATCCGGTTAA GCATCCAGCA
AAGAAGCGCG CTACTCAGTT TATCGAGATC TATCAGCCCT TTGCTCAGAC TCAAGTCAAC
GAGCAAGCCG ACCGCTGCCT CGATTGTGGT AACCCATATT GCGAGTGGAA ATGTCCGCTG
CATAACTATA TCCCTAACTG GCTTAAACTT GCCCAGCAGG GACGTATATT AGAAGCAGCC
GATCTCGTTC ATGAGACCAA CACCTTGCCT GAAATATGTG GCCGGGTTTG CCCTCAAGAC
AGATTGTGTG AAGGTGCCTG TACCCTTAAT GATGAGTTTG GCGCCGTCAC TATCGGCAAT
GTAGAGAAAT ACATAACCGA TACCGCCATT GCCCAAGGTT GGCGTCCAGA TTTAACCAAA
GTCACCCCAA GAAAAGAGCG TGTCGCCATT ATCGGGGCGG GGCCTGCAGG CCTTGGCTGT
GCTGATATCC TTGCCCGCAA TGGGGTTCAG TCGGTGGTTT TTGATAAGAA TCCACAGATA
GGCGGCCTAC TCACCTATGG TATTCCCGCC TTTAAGCTGG ATAAATCGGT GATGGCCACA
CGCAGAGAGG TCCTTGAAGG TATGGGGATC GAGTTTAAAC TTGGCGTGAC TGTAGGCGCT
GATATCCCAT TCGAAGAGTT AGTAGAGCAA TATGATGCTG TCTTCCTTGG CATGGGGACT
TACACCGCCA TGAAGGCGGG TCTGCCCGGA GAGGACGCTC AAGGTGTACA TCAAGCTCTG
CCCTACCTCA TTGGCAACAC ACACAATATT ATGGGCACCA CAGATCCAGA CTCTCCTTAT
CTGAGTTTAA AGGGGAAAAA AGTCGTGGTT CTCGGTGGCG GTGATACAGC GATGGATTGT
GTTCGCACCG CAGTTCGCCA AGGGGCAACT GAGGTCACAT GTGCCTACCG CCGAGATGAA
GAGAATATGC CTGGCTCACG CCGTGAGGTG CAAAACGCCA AAGAGGAGGG AGTGAACTTT
CTCTTCAACC GCCAACCTGT CGCCATCGAA ACTCAAGATG GTATCGTCAC AGGTATCACC
TGTGTAGAAA CTCAGATGGG AGCTGCTGAC AGCAGTGGAC GCCGACGTGC AGAAGCCATT
GAAGGTAGTG AAGCCTTACT TGACGCAGAT GCCATCATCA TCGCCTTCGG CTTCCAACCG
AGTCCTGCAT CTTGGCTCAA GGAGCACAAT GTCGACTTAG ATGAGTGGGG ACGTGTTATC
GCGCCAAAAG CGGCCGATAA TCCATTCCAA ACCACTAACC CTAAGATATT TGCTGGCGGT
GATATGGTGC GCGGCTCAGA TCTGGTGGTT ACCGCTATCG CCGAAGGACG AGATGCAGCG
CTAGGTATCC TCAATACTTT CGAAGACTAG
|
|---|
| Protein sequence | MSNDFQFIEV DRKDPVKHPA KKRATQFIEI YQPFAQTQVN EQADRCLDCG NPYCEWKCPL
HNYIPNWLKL AQQGRILEAA DLVHETNTLP EICGRVCPQD RLCEGACTLN DEFGAVTIGN
VEKYITDTAI AQGWRPDLTK VTPRKERVAI IGAGPAGLGC ADILARNGVQ SVVFDKNPQI
GGLLTYGIPA FKLDKSVMAT RREVLEGMGI EFKLGVTVGA DIPFEELVEQ YDAVFLGMGT
YTAMKAGLPG EDAQGVHQAL PYLIGNTHNI MGTTDPDSPY LSLKGKKVVV LGGGDTAMDC
VRTAVRQGAT EVTCAYRRDE ENMPGSRREV QNAKEEGVNF LFNRQPVAIE TQDGIVTGIT
CVETQMGAAD SSGRRRAEAI EGSEALLDAD AIIIAFGFQP SPASWLKEHN VDLDEWGRVI
APKAADNPFQ TTNPKIFAGG DMVRGSDLVV TAIAEGRDAA LGILNTFED
|
|---|
| |